| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,406,346 – 16,406,439 |
| Length | 93 |
| Max. P | 0.629294 |
| Location | 16,406,346 – 16,406,439 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 68.64 |
| Shannon entropy | 0.53816 |
| G+C content | 0.39313 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -8.88 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16406346 93 - 23011544 AGUCUUCGCCAACUUAAA--AAAAAAAAAACUCCACCGAAGGCAACGCAAAUGGCAAUUUAAGUCAUUUUGUUUGCCG--UUUUUUGCGUUCGAUUU .(((((((..........--................)))))))((((((((((((((..((((....)))).))))))--)...)))))))...... ( -22.27, z-score = -2.10, R) >droSec1.super_7 52218 89 - 3727775 ----AGUCCUCGCCAACUUCAAAAAAAUAACUCCACCGAAGGCAACGCAAAUGGCAAUUUAAGUCAUUUUGUUUGC----GUUUUUGCGUUCGAUUU ----................................((((.((((((((((((((.......))))).....))))----))...))).)))).... ( -18.20, z-score = -1.05, R) >droYak2.chr2R 2863059 90 - 21139217 ----AGGCCUCGCCAAGU--CAAAAAAUAACUCCACCGAAGGCAGCGCAAAUGGCAAUUUAAGUCAUUUUG-UUGCCGCUUUUUUUGCGUUCGAUUU ----.(((...)))....--................(((((((((((.(((((((.......)))))))))-)))))((.......)).)))).... ( -24.70, z-score = -1.76, R) >droEre2.scaffold_4845 19471594 76 - 22589142 -----------------A--AAAAAAAAAAACCCACCGAAGGCAGCGCAAAUGGCAAUUUAAGUCAUUUUG-UUGCCGC-UUUUUUGAGUGCGAUUU -----------------.--................((..(((((((.(((((((.......)))))))))-)))))((-((....)))).)).... ( -19.40, z-score = -1.37, R) >droWil1.scaffold_180772 4566219 74 - 8906247 -------------------GAAUCCUCUGGUUCCCUCUACGCCAUGGCAAAUGGCAAUUUAAGUCAUUUUGUAGAU----GUUUUUGCUUUUGCUUU -------------------(((((....)))))..(((((((....))(((((((.......))))))).))))).----......((....))... ( -15.70, z-score = -1.18, R) >consensus ________C___C__A_A__AAAAAAAUAACUCCACCGAAGGCAACGCAAAUGGCAAUUUAAGUCAUUUUGUUUGCCG__UUUUUUGCGUUCGAUUU ........................................(((((...(((((((.......)))))))...))))).................... ( -8.88 = -9.40 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:04 2011