| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,403,644 – 16,403,694 |
| Length | 50 |
| Max. P | 0.611126 |
| Location | 16,403,644 – 16,403,694 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 92.00 |
| Shannon entropy | 0.11020 |
| G+C content | 0.32000 |
| Mean single sequence MFE | -11.27 |
| Consensus MFE | -7.95 |
| Energy contribution | -8.73 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16403644 50 + 23011544 UUAAGUGCUUUCAUUUAUAUGGAAGGGCGUACAAAGAAUUGAAUUAUUUU ....((.(((((((....))))))).))...................... ( -9.60, z-score = -2.29, R) >droSec1.super_7 49520 50 + 3727775 UUAAGUGCUUUCUUGUACAUGGAAGGGCGCACUUAGAAUUGAAUUAUUUU ((((((((.(((((.(....).))))).)))))))).............. ( -12.10, z-score = -2.46, R) >droSim1.chr2L 16114104 50 + 22036055 UUAAGUGCUUUCUUGUACAUGGAAGGGCGCACUUAGAAUUGAAUUAUUUU ((((((((.(((((.(....).))))).)))))))).............. ( -12.10, z-score = -2.46, R) >consensus UUAAGUGCUUUCUUGUACAUGGAAGGGCGCACUUAGAAUUGAAUUAUUUU ((((((((.(((((........))))).)))))))).............. ( -7.95 = -8.73 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:45:00 2011