| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,377,336 – 16,377,430 |
| Length | 94 |
| Max. P | 0.932713 |
| Location | 16,377,336 – 16,377,430 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.31 |
| Shannon entropy | 0.30363 |
| G+C content | 0.41957 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -11.18 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16377336 94 - 23011544 GCUUCGAAUUCAGAGCCAGACUGGCUCCUCGUCGACUUCAUUAAGUUUCAAAACAAAAAAAAAAACAAAA-AAACCCA----CACACAACAACCGAGCU (((((((.....(((((.....)))))....)))).........(((....)))................-.......----.............))). ( -14.10, z-score = -2.02, R) >droSim1.chr2L 16086352 88 - 22036055 GCUUCGAAUUCAGAGCCAGACUGGCUCCUCGUCGACUUCAUUAAGUUUCAAAACAAAACAAAAAA-------AACACA----CACACAACAACCGAGCU (((((((.....(((((.....)))))....)))).........((((.......))))......-------......----.............))). ( -14.60, z-score = -2.20, R) >droSec1.super_7 22462 87 - 3727775 GCUUCGAAUUCAGAGCCAGACUGGCUCCUCGUCGACUUCAUUAAGUUUCAAAACAACAAAAAAA--------AACACA----CACACAACAACCGAGCU (((((((.....(((((.....)))))....)))).........(((....)))..........--------......----.............))). ( -14.10, z-score = -1.96, R) >droYak2.chr2R 2832476 99 - 21139217 GCUUCGAAUUCAGAGCCCGACUGGCUCCUCGUCGACUUCAUUAAGUUUCAAAACAAAACAAAAAAAAAAACCAACACACACUCACAAAACAACCGAGCU (((((((.....(((((.....)))))....)))).........((((.......))))....................................))). ( -13.60, z-score = -1.86, R) >droAna3.scaffold_12894 3791 83 + 7079 GCAUCGAAAUCAGAGCCAGACUGGCUCCUCGCCGACUUCAUUAAGUUCCCAAAAGAGAGUAAAAA------AAACGC-----CAAAACAUAACU----- ((..........(((((.....)))))(((...(((((....))))).......)))........------....))-----............----- ( -12.70, z-score = -1.09, R) >consensus GCUUCGAAUUCAGAGCCAGACUGGCUCCUCGUCGACUUCAUUAAGUUUCAAAACAAAAAAAAAAA_______AACACA____CACACAACAACCGAGCU ...((((.....(((((.....)))))....))))................................................................ (-11.18 = -11.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:57 2011