| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,346,481 – 16,346,574 |
| Length | 93 |
| Max. P | 0.600476 |
| Location | 16,346,481 – 16,346,574 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Shannon entropy | 0.37944 |
| G+C content | 0.54437 |
| Mean single sequence MFE | -30.96 |
| Consensus MFE | -22.03 |
| Energy contribution | -22.59 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16346481 93 - 23011544 -GCAGCAGUUGGAGGGAAAUUCCUUGGCCACUGCCGGAGCCAAAUGUGAUAGCAAGGCGAGCACACCAGAAUUACUGGAAAGGGAGUUUGCCUC -..........((((.((((((((((((..(....)..)))...((((...((...))...))))((((.....))))..))))))))).)))) ( -30.60, z-score = -1.05, R) >droMoj3.scaffold_6500 6957839 93 - 32352404 -GCAGCAACAACAGACUUUAAACACUGCCAUACCGUUAGCGAAAUGUGAUAGUAAAGCCAGCACGCCGGAGUUGCUGGAACGUGAGUUUGCUUC -.(((((((..............((((.((((.((....))...)))).))))....((.(....).)).)))))))((((....))))..... ( -22.00, z-score = 0.14, R) >droAna3.scaffold_12943 5013557 94 - 5039921 AGCAGCAGCUGGAAGGCCAUCCCCUAGCCACUGCCAUAGCCAAAUGUGAUAGCAAGGCCAGCACGCCGGAGCUCCUCGAACGGGAGUUCGCCUC .((((..(((((..((....)).)))))..))))((((......))))...((..(((......))).((((((((.....))))))))))... ( -31.20, z-score = -0.09, R) >droEre2.scaffold_4845 19411993 93 - 22589142 -GCAGCAGCUGGAAGGAAAUGCCCUGAGCACUGCCACAGCCAAAUGUGAUAGCAAGGCGAGCACACCAGAAUUACUGGAAAGGGAGUUCGCCUC -((.((((.((..(((......)))...))))))((((......))))...)).((((((((.(.((((.....))))....)..)))))))). ( -31.20, z-score = -1.50, R) >droYak2.chr2R 2800907 93 - 21139217 -GCAGCAGCUGGAGGGGAAUUCCCUGACUACUGCCACAGCAAAAUGUGAUAGCAAGGCGAGCACCCCAGAAUUGCUGGAAAGGGAGUUUGCAUC -((.((((..(..((((....))))..)..))))((((......))))...))...((((((.((((((.....)))....))).))))))... ( -33.70, z-score = -1.89, R) >droSec1.super_5 5070226 93 - 5866729 -GCAGCAGUUGGAGGGAAAUUCCUCGGCCACUGCCACAGCCAAAUGUGAUAGCAAGGCGAGCACUCCAGAAUUACUGGAAAGGGAGUUUGCCUC -((.((((((.(((((....))))).)..)))))((((......))))...)).((((((((.((((((.....)))))....).)))))))). ( -33.30, z-score = -1.80, R) >droSim1.chr2L 16054121 93 - 22036055 -GCAGCAGUUGGAGGGAAAUUCCUCGGCCACUGCCACAGCCAAAUGUGAUAGCAAGGCGAGCACCCCAGAAUUACUGGAAAGGGAGUUUGCCUC -((.((((((.(((((....))))).)..)))))((((......))))...)).((((((((.((((((.....)))....))).)))))))). ( -34.70, z-score = -2.19, R) >consensus _GCAGCAGCUGGAGGGAAAUUCCCUGGCCACUGCCACAGCCAAAUGUGAUAGCAAGGCGAGCACACCAGAAUUACUGGAAAGGGAGUUUGCCUC .((.((((.(((.(((......)))..)))))))((((......))))...)).((((((((.((((((.....))))....)).)))))))). (-22.03 = -22.59 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:52 2011