| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,345,567 – 16,345,659 |
| Length | 92 |
| Max. P | 0.888812 |
| Location | 16,345,567 – 16,345,659 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 72.62 |
| Shannon entropy | 0.54149 |
| G+C content | 0.50087 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -10.28 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16345567 92 + 23011544 ACUCGCUUGUAAAG---CAAUCAGUAGGUGGUGGAGUUUGUGGUGUGUUAACAAGUCUUUCUUCUCGUCCUUCAGACUCCACCUCCGGUGAUAUC ....(((.....))---).((((...((.(((((((((((.((..((.....(((.....)))..))..)).))))))))))).))..))))... ( -29.70, z-score = -3.22, R) >droWil1.scaffold_180772 4448591 89 + 8906247 AUUCGCUAGUAAAAUUACAAUCCGUAGGCGGUGGCGUCACUACCUCCU---CCUGCCUUGACCCUUGGCUUUC-CUCUUCACCGUCAUUGAUG-- ....(((((((....))).....(((((.((.((........)).)).---))))).........))))....-...................-- ( -16.40, z-score = -0.25, R) >droAna3.scaffold_12943 5012628 87 + 5039921 ACUCGCUGGUGAAG---CAAUCGGUGGGCGGAGGUGUCUGCGGAUUG-----GAUUGCCUCUCCUGGGCCUCCACUCCCGACGAUGACGAAGAAG .(((((((((....---..)))))))))((..(.((((.(.(((.((-----((..((((.....)))).)))).)))))))).)..))...... ( -29.80, z-score = 0.11, R) >droEre2.scaffold_4845 19411079 92 + 22589142 ACUCGCUUGUAAAG---CAAUCAGUAGGCGGUGGAGUUUGUGGGGUGUUAACAAGCCUUUGUUCUCUAUCUUCAGUCUCCACCUCCGCUGAUAUC ....(((.....))---).((((((.((.(((((((.(((.((((((..(((((....)))))..).)))))))).))))))).))))))))... ( -31.80, z-score = -3.60, R) >droYak2.chr2R 2799990 92 + 21139217 ACUCGCUCGUAAAG---CAAUCAGUAGGUGGUGGAGUUUGUGGGGUGUUAACAAGCCUUUGUUCUCUUUCUUCAGUCUCCACCUCCCCUGACAUC ....(((.....))---)..((((..((.(((((((.(((.((((.(..(((((....)))))..).)))).))).))))))).)).)))).... ( -28.50, z-score = -2.48, R) >droSec1.super_5 5069312 92 + 5866729 ACUCGCUUGUAAAG---CAAUCAGUAGGUGGUGGAGUUUGUGGUGUGUUAACAAGUCUUUCUUCUCGUCCUUCAGACUCCGCCUCCGGUGAUAUC ....(((.....))---).((((...((.(((((((((((.((..((.....(((.....)))..))..)).))))))))))).))..))))... ( -29.30, z-score = -3.11, R) >droSim1.chr2L 16053207 92 + 22036055 ACUCGCUUGUAAAG---CAAUCAGUAGGUGGUGGAGUUUGUGGUGUGUUAACAAGUCUUUCUUCUCGUCCUUCAGACUCCGCCUCCGGUGAUAUC ....(((.....))---).((((...((.(((((((((((.((..((.....(((.....)))..))..)).))))))))))).))..))))... ( -29.30, z-score = -3.11, R) >consensus ACUCGCUUGUAAAG___CAAUCAGUAGGUGGUGGAGUUUGUGGUGUGUUAACAAGUCUUUCUUCUCGUCCUUCAGUCUCCACCUCCGCUGAUAUC ..........................((.(((((((.(((.((.........................))..))).))))))).))......... (-10.28 = -10.95 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:51 2011