| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,344,438 – 16,344,546 |
| Length | 108 |
| Max. P | 0.597750 |
| Location | 16,344,438 – 16,344,546 |
|---|---|
| Length | 108 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.61 |
| Shannon entropy | 0.31627 |
| G+C content | 0.57660 |
| Mean single sequence MFE | -41.75 |
| Consensus MFE | -25.51 |
| Energy contribution | -27.56 |
| Covariance contribution | 2.05 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16344438 108 + 23011544 AACUGCGAGAUGGCCAAUGACUUCACGGCAGCCGUCGCCGCUUCGGCGGCACAACUGCUCGCCGCCUUUCCACUAUUCGGUGGCGCAUACUUGGAGAUGUCAAACUUC ..((.(((((((..............(((((..((.(((((....)))))))..)))))(((((((............)))))))))).)))).))............ ( -40.00, z-score = -2.15, R) >droMoj3.scaffold_6500 6955664 108 + 32352404 AACUGCGAUAUGGCAAGCGAUUUGACCGCUGCAGUAGCUGCCUCUGCGGCACAGCUGCUUGCGGCCAUGCCGUUGUUAGGAGGGGCAUACUUAGAGAGAUCAAACUUG ......(((...(((.(((.......))))))(((((((.(((((((((((..((((....))))..)))))).....)))))))).)))).......)))....... ( -36.00, z-score = 0.09, R) >droVir3.scaffold_12963 7054182 108 - 20206255 AACUGCGAUAUGGCAAGCGAUUUGACCGCAGCAGUAGCCGCCUCGGCGGCACAGCUGCUGGCGGCCAUGGCGUUGUUGGGAGGCGCAUACUUAGAGAUGUCAAACUUG ...((((...((((((.((...((.((((((((((.(((((....)))))...)))))).)))).))...)))))))).....))))..................... ( -39.60, z-score = -0.07, R) >droWil1.scaffold_180772 4447435 108 + 8906247 AACUGAGAGAUGGCCAAAGAUUUGACAGCUGCGGUUGCCGCUUCAGCGGCACAACUGCUGGCCGCCUUUCCAUUAUUGGGUGGUGCAUACUUGGAGAUGUCAAAUUUA .................((((((((((((((((((((((((....))))))..))))).)))((((..((((....)))).))))............)))))))))). ( -38.50, z-score = -1.86, R) >droPer1.super_1 9495404 108 + 10282868 AACUGCGAGAUGGCCAGGGAUUUCACAGCCGCUGUCGCCGCUUCGGCGGCACAACUGCUGGCCGCCUUGCCACUGUUCGGUGGCGCAUACUUGGAAAUGUCGAACUUC .....(((.((..(((((.......((((.(.(((.(((((....)))))))).).))))((((((..((....))..)))))).....)))))..)).)))...... ( -47.50, z-score = -2.83, R) >dp4.chr4_group3 8045945 108 + 11692001 AACUGCGAGAUGGCCAGGGAUUUCACAGCCGCUGUCGCCGCUUCGGCGGCACAGCUGCUGGCCGCCUUGCCACUGUUCGGUGGCGCAUACUUGGAAAUGUCGAACUUC .....(((.((..(((((.......((((.(((((.(((((....)))))))))).))))((((((..((....))..)))))).....)))))..)).)))...... ( -54.10, z-score = -4.17, R) >droAna3.scaffold_12943 5011451 108 + 5039921 AACUGCGAAAUGGCCAGGGAUUUGACCGCCGCGGUGGCAGCUUCCGCCGCACAACUGCUGGCCGCCUUCCCAUUGUUCGGCGGCGCAUACUUGGAGAUGUCGAACUUC ...((.(((.(((((((((......))...(((((((......))))))).......)))))))..))).))..((((((((.(.((....)))...))))))))... ( -38.90, z-score = -0.14, R) >droEre2.scaffold_4845 19409956 108 + 22589142 AACUGCGAGAUGGCCAAUGACUUCACAGCAGCCGUCGCCGCUUCGGCGGCACAACUACUCGCCGCCUUUCCAUUAUUCGGUGGCGCAUACUUGGAGAUGUCAAACUUC ..((.(((((((((...((......))...))))))(((((....))))).........(((((((............))))))).....))).))............ ( -38.00, z-score = -2.45, R) >droYak2.chr2R 2798870 108 + 21139217 AACUGCGAGAUGGCCAAUGACUUCACGGCAGCCGUCGCUGCUUCGGCGGCACAACUGCUCGCCGCCUUUCCAUUAUUCGGUGGCGCAUACUUGGAGAUGUCAAACUUC ..((.(((((((((((.(((......((((((....))))))..((((((..........))))))..........))).)))).))).)))).))............ ( -37.90, z-score = -1.65, R) >droSec1.super_5 5068186 108 + 5866729 AACUGCGAGAUGGCCAAUGACUUCACGGCGGCCGUCGCCGCUUCGGCGGCACAGCUGCUCGCCGCCUUUCCACUAUUUGGUGGCGCAUACUUGGAGAUGUCAAACUUC ..((.(((((((..............((((((.((.(((((....))))))).))))))(((((((............)))))))))).)))).))............ ( -44.40, z-score = -2.60, R) >droSim1.chr2L 16052081 108 + 22036055 AACUGCGAGAUGGCCAAUGACUUCACGGCGGCCGUCGCCGCUUCGGCGGCACAGCUGCUCGCCGCCUUUCCACUAUUUGGUGGCGCAUACUUGGAGAUGUCAAACUUC ..((.(((((((..............((((((.((.(((((....))))))).))))))(((((((............)))))))))).)))).))............ ( -44.40, z-score = -2.60, R) >consensus AACUGCGAGAUGGCCAAUGAUUUCACAGCAGCCGUCGCCGCUUCGGCGGCACAACUGCUCGCCGCCUUUCCAUUAUUCGGUGGCGCAUACUUGGAGAUGUCAAACUUC ......((.((..((((.............((.((.(((((....)))))...)).))..((((((............))))))......))))..)).))....... (-25.51 = -27.56 + 2.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:50 2011