| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,342,253 – 16,342,305 |
| Length | 52 |
| Max. P | 0.841355 |
| Location | 16,342,253 – 16,342,305 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 66.12 |
| Shannon entropy | 0.64102 |
| G+C content | 0.39220 |
| Mean single sequence MFE | -10.21 |
| Consensus MFE | -3.22 |
| Energy contribution | -3.47 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.841355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16342253 52 + 23011544 CCUCUUAUCAACAAUAAAGUGCUCACUUGCCAAUAGCAGGUGGAGAACUAAU .................(((.(((((((((.....)))))).))).)))... ( -12.30, z-score = -2.06, R) >droSim1.chr2L 16049898 52 + 22036055 CCUCUUAUCAACAAUAGAGUGCUCACUUGCCACUAGCAGGUGAAAAACUAAU .................(((..((((((((.....))))))))...)))... ( -12.60, z-score = -2.60, R) >droSec1.super_5 5066002 52 + 5866729 CCUCUUAUCAACAAUAGAGUGCUCACUUGCAACUAGCAGGUGAAAAACUAAU .................(((..((((((((.....))))))))...)))... ( -13.10, z-score = -2.96, R) >droYak2.chr2R 2796684 50 + 21139217 CCUCUUAUCAACGACAA--UGUUCACUUGCCAAUAGCACGUGAAAAACUAAU .................--..(((((.(((.....))).)))))........ ( -7.90, z-score = -2.54, R) >droEre2.scaffold_4845 19407745 52 + 22589142 CCUCUUAUCAACAACAGAGUGUUCACUUGCAAAUGGCAGGUGAAAAGCUAAU .................(((.(((((((((.....)))))))))..)))... ( -13.60, z-score = -2.23, R) >dp4.chr4_group3 8043001 52 + 11692001 CUGUUCAUCACUCUCAAGCAGCAGUUGCUCUAGUAGCCAAAAAUAAUCAAAU (((((...........)))))..(((((....)))))............... ( -5.00, z-score = -0.31, R) >droPer1.super_1 9492458 52 + 10282868 CUGUUCAUCACUCUCUAGCAGCAGUUGCUCUAGUAGCCAAAAAUAAUCAAAU ............((((((.(((....))))))).))................ ( -7.00, z-score = -1.21, R) >consensus CCUCUUAUCAACAACAAAGUGCUCACUUGCCAAUAGCAGGUGAAAAACUAAU ......................((((.(((.....))).))))......... ( -3.22 = -3.47 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:49 2011