| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,320,449 – 16,320,540 |
| Length | 91 |
| Max. P | 0.527657 |
| Location | 16,320,449 – 16,320,540 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 64.12 |
| Shannon entropy | 0.70178 |
| G+C content | 0.41638 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -5.22 |
| Energy contribution | -6.92 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16320449 91 - 23011544 CUUGACAACUUCGUGGGCUUUGGCCUUUGGUUGGUUAACCAGGAGUGCCAGAAAUUCCCACUGUUGAU--AAUAAACAGCGCAAAUGGCUGGA .....((((...(((((.((((((((((((((....))))).))).))))))....))))).))))..--......((((.......)))).. ( -30.30, z-score = -1.90, R) >droAna3.scaffold_12916 9564269 88 + 16180835 CUUCACAAUUGUGUUUAGUUUGGCCUUUUG---GAAAACCGAGAAUAACAGAAUUUCCCAUUUUGGCC--AAUAAACACUACAAAUCGAUUGA .....((((((((((((..(((((((((((---(....)))))).....(((((.....)))))))))--)))))))))........))))). ( -19.90, z-score = -2.30, R) >droEre2.scaffold_4929 8015595 74 - 26641161 CUUGACAACUUUGUGGGCUUUGGCCUUUG----GUAAAUCAAGAGGGCCAGAAAUUACCACUGUUGAU--AAUAAACCGU------------- .....((((...((((..((((((((((.----.........)))))))))).....)))).))))..--..........------------- ( -22.10, z-score = -2.35, R) >droYak2.chr2L 3316904 89 + 22324452 CUUGCCAGCUUUGUGGGUUUUGGCCUUUG----UUAAACCAAUAGGCCAAAAAAUUCCCACUUUUGAUACAAAAAACCUUGCAAAUGGCUGGU ...(((((((..(((((((((((((((((----......))).)))))))))....)))))(((((...)))))............))))))) ( -30.50, z-score = -3.17, R) >droSec1.super_5 5044299 87 - 5866729 CUUGACAACUUCGUGGGCUUUGGCCUUUG----GUUAACCAGGAGUGCCAGAAAUUCCCACUGUUGAU--AAUCAACAGUGCAAAUGGCUGGA .......(((((..((((....)))).((----(....)))))))).((((..(((..((((((((..--...))))))))..)))..)))). ( -31.80, z-score = -2.85, R) >droSim1.chr2L 16027911 87 - 22036055 CUUGACAACUUCGUGGGCUUUGGCCUUUG----GUUAACCAGGAGUGCCAGAAAUUCCCACUGUUGAU--AAUAAACAGUGCAAAUGGCCGGA ...............((((((((((((((----(....))).))).)))))).(((..(((((((...--....)))))))..))).)))... ( -25.70, z-score = -1.10, R) >droVir3.scaffold_12963 12334274 71 + 20206255 UCUAUUGGCUUUGUAUAC---GCCCUUUGCAAAGCAAACU--UAUUGAUUGUAUUUUGAACAUUGGAGAAAUUACA----------------- ((((.((((((((((...---......)))))))).....--..(..(.......)..).)).)))).........----------------- ( -11.90, z-score = -0.85, R) >consensus CUUGACAACUUUGUGGGCUUUGGCCUUUG____GUAAACCAAGAGUGCCAGAAAUUCCCACUGUUGAU__AAUAAACAGUGCAAAUGGCUGGA ............(((((.((((((((((.............)))).))))))....)))))................................ ( -5.22 = -6.92 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:45 2011