| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,547,820 – 1,547,915 |
| Length | 95 |
| Max. P | 0.987643 |
| Location | 1,547,820 – 1,547,915 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.29 |
| Shannon entropy | 0.40017 |
| G+C content | 0.38590 |
| Mean single sequence MFE | -24.56 |
| Consensus MFE | -15.55 |
| Energy contribution | -17.51 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1547820 95 + 23011544 GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGAGAGCAAAAGUUUUG-CAA--GCAAACAAAAGUGCCGAAAUGACCG- ...................((((((((((...(((((((((((..(((...))).))))))))))).-...--(((........))))))))))))).- ( -25.80, z-score = -3.16, R) >droSim1.chr2L 1524277 95 + 22036055 GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGAGAGCAAAAGUUUUG-CAA--GCAAACAAAAGUGCCGAAAUGACCG- ...................((((((((((...(((((((((((..(((...))).))))))))))).-...--(((........))))))))))))).- ( -25.80, z-score = -3.16, R) >droSec1.super_14 1494316 95 + 2068291 GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGAGAGCAAAAGUUUUG-CAA--GCAAACAAAAGUGCCGAAAUGACCG- ...................((((((((((...(((((((((((..(((...))).))))))))))).-...--(((........))))))))))))).- ( -25.80, z-score = -3.16, R) >droYak2.chr2L 1523497 96 + 22324452 GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGAGAGCAAAAGUUUUG-CAA--GCAAACAAAAGUGCCGAAAUGACCAA .................((((((((((((...(((((((((((..(((...))).))))))))))).-...--(((........))))))))))))))) ( -26.90, z-score = -3.51, R) >droEre2.scaffold_4929 1596002 95 + 26641161 GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGACAGCAAAAGUUUUG-CAU--GCAAACAAAAGUGCCGAAAUGACCA- ..................(((((((((((...(((((((((((............)))))))))))(-(((--..........)))))))))))))))- ( -25.90, z-score = -2.95, R) >droAna3.scaffold_12916 14948195 95 + 16180835 GUAAAUACCCAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUUCAUUGAGGAAAACUUUUGGCAA--GCAAACAA--GUGCAAAAAUGACCAA .................((((((((((............((((((.((((......)))).....))))))--(((.....--.)))..)))))))))) ( -20.00, z-score = -1.28, R) >droWil1.scaffold_180708 3320945 95 + 12563649 GGAAGUGCAAAUGGAAUUUUGCCACUUUGCUUGGCUCUUUGUUUAACUGUUGA-AGCGACAACAGGAAAAGCCGCACACCAACAAGUGAAAAUACC--- .((((((((((......)))).))))))((..((((.(((......((((((.-.....))))))))).)))))).(((......)))........--- ( -21.70, z-score = -0.30, R) >consensus GUAAAUACACAUACAAAUUGGUCGUUUCGAUUGAAAUUUUUGCCACUUGCCGAGAGCAAAAGUUUUG_CAA__GCAAACAAAAGUGCCGAAAUGACCA_ ..................(((((((((((...(((((((((((............))))))))))).......(((........)))))))))))))). (-15.55 = -17.51 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:42 2011