| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,318,354 – 16,318,458 |
| Length | 104 |
| Max. P | 0.894172 |
| Location | 16,318,354 – 16,318,458 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.86 |
| Shannon entropy | 0.23562 |
| G+C content | 0.53799 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -20.48 |
| Energy contribution | -20.76 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16318354 104 + 23011544 GGCUGGUUCCACCGCCCUCCGCCCGAUCUACUACCACUAUUACUACUAUAUAACGCUCGAUCGUUAUGUCAGCGGACUCGCCUUGUUGACUUUCUUUCGAGCCA-- (((.((.....)))))......................................((((((..(....((((((((.......))))))))...)..))))))..-- ( -23.50, z-score = -1.65, R) >droEre2.scaffold_4929 8013617 92 + 26641161 GGCUGGUU--GCCUUCCCCCGCCCGAUCUACUAC------------UAUAUAUCGCUCGAUCGUUAUGUCAGCGGACUCGCCUUGUUGACUUUCUUUCGGGCCCCA (((.....--))).......((((((........------------.....(((....)))......((((((((.......))))))))......)))))).... ( -23.10, z-score = -0.81, R) >droYak2.chr2L 3314952 85 - 22324452 GGCUGGUUCCCCCGCC-------CGAUCUACUAC------------UAUAUAUCGCUCGAUCGUUAUGUCAGCGGACUCGCCUUGUUGACUUUCUUUCGAGCCA-- (((.((....)).)))-------...........------------........((((((..(....((((((((.......))))))))...)..))))))..-- ( -23.60, z-score = -2.07, R) >droSec1.super_5 5042233 92 + 5866729 GGCUGGUUCCACCGCCCUCCACCCGAUCUACUGC------------UAUAUAUCGCUCGAUCGUUAUGUCAGCCGACUCGCCUUGUUGACUUUCUUUCGAGCCA-- (((.((.....)))))..................------------........((((((..(....((((((...........))))))...)..))))))..-- ( -21.20, z-score = -1.49, R) >droSim1.chr2L 16025872 92 + 22036055 GGCUGGUUCCACCGCCCUCCACCCGAUCUACUGC------------UAUAUAUCGCUCGAUCGUUAUGUCAGCCGACUCGCCUUGUUGACUUUCUUUCGAGCCA-- (((.((.....)))))..................------------........((((((..(....((((((...........))))))...)..))))))..-- ( -21.20, z-score = -1.49, R) >consensus GGCUGGUUCCACCGCCCUCCACCCGAUCUACUAC____________UAUAUAUCGCUCGAUCGUUAUGUCAGCGGACUCGCCUUGUUGACUUUCUUUCGAGCCA__ (((.((.....)))))......................................((((((..(....((((((((.......))))))))...)..)))))).... (-20.48 = -20.76 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:44 2011