| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,285,062 – 16,285,120 |
| Length | 58 |
| Max. P | 0.693780 |
| Location | 16,285,062 – 16,285,120 |
|---|---|
| Length | 58 |
| Sequences | 9 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 71.67 |
| Shannon entropy | 0.59216 |
| G+C content | 0.45838 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -6.13 |
| Energy contribution | -5.94 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16285062 58 + 23011544 AACAGACAGCAGCUGCUAAAACGCAGUUGUUAUACC-GUCCACACUGGUGGCAAAAAUA .......(((((((((......))))))))).....-(.((((....)))))....... ( -17.40, z-score = -2.32, R) >droSim1.chr2L 15992839 58 + 22036055 AACAGACAGCAGCUGCUAAAACGCAGUUGUUAUACC-GUCCACACUAGUGGCAAAAAUA .......(((((((((......))))))))).....-(.((((....)))))....... ( -17.50, z-score = -3.07, R) >droSec1.super_5 5009149 58 + 5866729 AACAGACAGCAGCUGCUAAAACGCAGUUGUUAUACC-GUCCACACUGGUGGCAAAAAUA .......(((((((((......))))))))).....-(.((((....)))))....... ( -17.40, z-score = -2.32, R) >droYak2.chr2L 3281710 58 - 22324452 AACGGACAGCAGCUGCUAAAACGCAGUUGUUAUACC-GCCCACACUGGUGGCAAAAAUA ..(((..(((((((((......)))))))))...))-).((((....))))........ ( -19.60, z-score = -2.52, R) >droEre2.scaffold_4929 7980320 58 + 26641161 AACGGACAGCAGCUGCUAAAACGCAGUUGUUAUACC-GCCCACACUGGUGGCAAAAAUA ..(((..(((((((((......)))))))))...))-).((((....))))........ ( -19.60, z-score = -2.52, R) >droAna3.scaffold_12943 1602749 58 + 5039921 AAAAGAC-GCAGCUGCUGAAACGCAGUUGAUUUACCCGCCCACACUGGUGGCCAAAAUA .......-.(((((((......)))))))......(((((......)))))........ ( -16.70, z-score = -2.06, R) >dp4.chr4_group2 597567 53 - 1235136 --AAAGCAGCUGCUGUUAAAACGAAGUUCCCUCCCA----CACACUGGUGGCCAAAAUA --..(((....)))...................(((----(......))))........ ( -6.50, z-score = 1.22, R) >droPer1.super_8 3249809 53 + 3966273 --AAAGCAGCUGCUGUUAAAACGAAGUUCCCUCCCA----CACACUGGUGGCCAAAAUA --..(((....)))...................(((----(......))))........ ( -6.50, z-score = 1.22, R) >droMoj3.scaffold_6500 4542098 54 + 32352404 GGCAGAU-GUUGUUGCAGAGACUCGAUUUCGAACUGUAUUUGCUUUAGGUAUAAA---- (((((((-(..(((...((((.....)))).)))..))))))))...........---- ( -10.20, z-score = -0.33, R) >consensus AACAGACAGCAGCUGCUAAAACGCAGUUGUUAUACC_GUCCACACUGGUGGCAAAAAUA ........((.(((((......))))).............(((....)))))....... ( -6.13 = -5.94 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:43 2011