| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,273,576 – 16,273,682 |
| Length | 106 |
| Max. P | 0.603224 |
| Location | 16,273,576 – 16,273,682 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 95.66 |
| Shannon entropy | 0.07824 |
| G+C content | 0.50947 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -28.32 |
| Energy contribution | -27.80 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16273576 106 - 23011544 AGCUGGUCAAGCAAAAGCAACAAACACAGCGAGAAAACAAGGUUAGAGCCAAGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCG .((((((((.((....((..........))..........(((....)))..))))))))))...((((((.(((((....))))).))))))............. ( -31.40, z-score = -1.75, R) >droSim1.chr2L 15982776 106 - 22036055 AGCUGGUCAAGCAAAAGCAACAAAAACAGCGAGAAAACAAGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCG .((((((((.((....((..........))..........(((....)))))..))))))))...((((((.(((((....))))).))))))............. ( -31.80, z-score = -1.31, R) >droSec1.super_5 4999158 106 - 5866729 AGCUGGUCAAGCAAAAGCAACAAAAACAGCGAGAAAACAAGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCG .((((((((.((....((..........))..........(((....)))))..))))))))...((((((.(((((....))))).))))))............. ( -31.80, z-score = -1.31, R) >droYak2.chr2L 3267021 104 + 22324452 AGCUGGUCAAGCAAAAGCAACAAACACAGUGAGAAAACAAGGUUAGAGCC--GCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCG .((((((((.((................((......))..(((....)))--))))))))))...((((((.(((((....))))).))))))............. ( -31.30, z-score = -1.68, R) >droEre2.scaffold_4929 7969970 106 - 26641161 AGCUGGUUAAGCAAAAGCAACAAACACAGUGAGAAAACAAGGUUAUAGUCGCGCUGACCGGCAGAAAAGCUCGAUUCCCAAGAGCCCAGCUUUCCCAAUUGCGUCG .((((((...((....))........(((((.((.(((...)))....)).))))))))))).((...((((.........))))...((..........)).)). ( -22.60, z-score = 0.32, R) >consensus AGCUGGUCAAGCAAAAGCAACAAACACAGCGAGAAAACAAGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCG .((((((((.((....((..........))..........(((....)))..))))))))))...((((((.(((((....))))).))))))............. (-28.32 = -27.80 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:41 2011