| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,272,636 – 16,272,741 |
| Length | 105 |
| Max. P | 0.659385 |
| Location | 16,272,636 – 16,272,741 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Shannon entropy | 0.30623 |
| G+C content | 0.28751 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -9.12 |
| Energy contribution | -11.00 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16272636 105 - 23011544 AGAGAU-CAGUGUUGUGAACAACACUGAUGUGUGAAAGAAAACUUGAUGAUUGGUAUUGCAAAUGUAUUGAUAAUUUUAUAAUGUAAAACCAAUAAUUCCUAUUAA ..(.((-((((((((....)))))))))).)..............((..((((((.(((((..((((..........)))).))))).))))))...))....... ( -26.10, z-score = -3.92, R) >droSim1.chr2L 15981848 99 - 22036055 AGAGAU-CAGUGUUGUGAAUAACACUGAUGUGAGAAA-GAAACUUGAUGAUUGGUGUUGCAAAUUU-----GGAUUUUGUAAUGUAAAACCAAUAAUUCUUAUAAC ....((-((((((((....))))))))))(((((((.-....(.....)((((((((((((((...-----....)))))))).....))))))..)))))))... ( -25.00, z-score = -3.65, R) >droSec1.super_5 4998233 100 - 5866729 AGAGAU-CAGUGUUGUGAAUAACACUGAUGUGAGAAAGGAAACUUGAUGAUUGGUGUUGCAAAUUU-----UGAUUUUGUAAUGUAAAUCCAAUAAUUCUUAUAAC ....((-((((((((....))))))))))(((((((((....)))...((((.(..(((((((...-----....)))))))..).)))).......))))))... ( -28.30, z-score = -4.55, R) >droYak2.chr2L 3266068 96 + 22324452 AGAGAUGUUUUGUUGUGAAUAA--CUGAUGUGAGAAAGAAAAGUUGAUAA---GAAUUGCUUAUUU-----CGAUUUUAUAAUGUAAUACUAAUGACGCCUUUAAA ((((.((((.....(((....(--(....))........(((((((((((---(.....))))..)-----))))))).........)))....)))).))))... ( -9.70, z-score = 0.96, R) >consensus AGAGAU_CAGUGUUGUGAAUAACACUGAUGUGAGAAAGAAAACUUGAUGAUUGGUAUUGCAAAUUU_____UGAUUUUAUAAUGUAAAACCAAUAAUUCCUAUAAA .......((((((((....))))))))......................((((((.((((.......................)))).))))))............ ( -9.12 = -11.00 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:40 2011