| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,256,924 – 16,257,001 |
| Length | 77 |
| Max. P | 0.921747 |
| Location | 16,256,924 – 16,257,001 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 61.01 |
| Shannon entropy | 0.76219 |
| G+C content | 0.45114 |
| Mean single sequence MFE | -20.59 |
| Consensus MFE | -8.92 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16256924 77 - 23011544 CGUCAACGAACACUCGCACAACUACUGAGCCACAAAGUAUGUGUGCUUGUGUGCGUGCGUUGGCAUUUACAUUCAAU .(((((((..(((.((((((.......(((((((.....)))).))))))))).))))))))))............. ( -25.91, z-score = -2.00, R) >droEre2.scaffold_4929 7953141 73 - 26641161 CGUCAGCGAGCACACAUACAAAUACUGAGCCACCAAGUAUGUGAGCUUCUGUGCG----UUGGCGUUUACAUUAAAA (((((((((((.(((((((.................))))))).)))......))----))))))............ ( -20.23, z-score = -1.42, R) >droSec1.super_5 4978130 77 - 5866729 CGUCAACGAACACUCGCACAACUACUGAGCCCCAAAGUAUGUGUGCUUGUGUGCGUGCAUUGGCAUUUACAUUCAAU .(((((((.((((..(((((..((((.........))))..)))))..)))).)))....))))............. ( -21.20, z-score = -1.10, R) >droSim1.chr2L 15966103 77 - 22036055 CGCCAACGAACACUCGCACAACUACUGAGCCCCAAAGUAUGUGUGCUUGUGUGCGUGCAUUGGCAUUUACAUUCAAU .(((((((.((((..(((((..((((.........))))..)))))..)))).)))....))))............. ( -23.90, z-score = -2.06, R) >droPer1.super_5 1644772 71 - 6813705 CCUAAAGGCAUACGCAUACACAUGCUCAAGGCAGCAGUGUAUAUGUAUGCAUGUAAGUAUGUAUAUCGCUG------ .......(((((((.((((((.((((......)))))))))).))))))).....................------ ( -21.00, z-score = -1.04, R) >droWil1.scaffold_181089 10030916 60 + 12369635 CACCAAUAAAAAUAGCCACCAUUUGUGGGCCACAAAUUGUUUGUGCUAGUGUGUGUGUGU----------------- (((((.......(((((((.(((((((...))))))).))..).)))).....)).))).----------------- ( -11.30, z-score = 0.96, R) >consensus CGUCAACGAACACUCGCACAACUACUGAGCCACAAAGUAUGUGUGCUUGUGUGCGUGCAUUGGCAUUUACAUUCAAU .(((((((.((((..(((((..((((.........))))..)))))..)))).))....)))))............. ( -8.92 = -9.07 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:37 2011