| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,251,795 – 16,251,867 |
| Length | 72 |
| Max. P | 0.894897 |
| Location | 16,251,795 – 16,251,867 |
|---|---|
| Length | 72 |
| Sequences | 8 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 55.66 |
| Shannon entropy | 0.90268 |
| G+C content | 0.61272 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -8.04 |
| Energy contribution | -7.09 |
| Covariance contribution | -0.95 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16251795 72 - 23011544 -----UCUCUCUUCGUUCUCCCCG-GCAAUGGAGACUUACUGCCGGACGGAGCGGCCGUUUCCGUGGCGUAAAAUGGG- -----...(((..((((((..(((-(((..(....)....))))))..))))))((((......)))).......)))- ( -26.00, z-score = -0.99, R) >droSim1.chr2L 15961468 77 - 22036055 UCUCUCCGCUCUCCGCUCUGCCCG-GCAAUGGAGACUUACUGCCGGACGGAGCGGCCGUUUCCGUGGCGUAAAAUGGG- .....(((.....(((((((.(((-(((..(....)....)))))).)))))))((((......))))......))).- ( -32.90, z-score = -2.14, R) >droSec1.super_5 4973543 77 - 5866729 UCUCUCCGCUCUCCGCUCUGCCCG-GCAAUGGAGACUUACUGCCGGACGGAGCGGCCGUUUCCGUGGCGUAAAAUGGG- .....(((.....(((((((.(((-(((..(....)....)))))).)))))))((((......))))......))).- ( -32.90, z-score = -2.14, R) >droYak2.chr2L 3244739 70 + 22324452 -------UCUCUCCGCUCUCUCCG-GCAAUGGAGACUUACUGCCGGACGGAGCAAUCGUUUCCGUGGCGUAAAAUGGG- -------.......(((((.((((-(((..(....)....))))))).)))))........((((........)))).- ( -27.30, z-score = -2.71, R) >droEre2.scaffold_4929 7948326 70 - 26641161 -------UCUCUCCGCUCUCUCCG-GCAAUGGAGACUUACUGCCGGACGGAGCGGUCGUUUCCGUAGCGUAUAAUGGG- -------.....(((((((.((((-(((..(....)....))))))).)))))))......((((........)))).- ( -30.80, z-score = -3.20, R) >droAna3.scaffold_12916 142272 59 - 16180835 ------CUUUCUCCCAUUUCUCUG-GCA---GGUAUCCACUG--GGCCGGAGAGCCAGUACAUAUGCCGGA-------- ------...........(((((((-((.---(((....))).--.)))))))))((.(((....))).)).-------- ( -17.90, z-score = -0.53, R) >dp4.chr4_group1 1703553 74 + 5278887 -CCACUUGGUCGUGUUCGUGUCUGUGUGGGGGAGACCGAAC-CCGGACACGG-ACCCGCUUUUGGGCGGCCUGUCGA-- -......(((((((((((((((((.((..((....))..))-.)))))))))-))(((....)))))))))......-- ( -35.00, z-score = -1.89, R) >droPer1.super_5 1638490 72 - 6813705 -------CCCCCUGGGCUUCAAGGGGAGGGAGCGGUAGAGCGGCAGCAGAGCGGUAGGCGCCUCUAGAGUGAGAGCGAA -------.(((((........)))))((((.(((.(...((.((......)).)).).)))))))...((....))... ( -23.20, z-score = 1.17, R) >consensus ______CUCUCUCCGCUCUCUCCG_GCAAUGGAGACUUACUGCCGGACGGAGCGGCCGUUUCCGUGGCGUAAAAUGGG_ ...............((((..(((.(((..(....)....))))))..)))).........((((........)))).. ( -8.04 = -7.09 + -0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:35 2011