| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,205,327 – 16,205,419 |
| Length | 92 |
| Max. P | 0.730082 |
| Location | 16,205,327 – 16,205,419 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Shannon entropy | 0.40289 |
| G+C content | 0.47000 |
| Mean single sequence MFE | -21.16 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.66 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16205327 92 - 23011544 -----ACAUUAUCCAGACGCCCAUAUCAUGUUGGGCUAUCAUUGUCCGAUUUAUUGGCAACAAGGGCAUCGU-CGACCACUCGUCUUUCAUUCAUUCA---- -----.........((((((((.......(((((((.......)))))))...(((....))))))).....-.((....))))))............---- ( -22.50, z-score = -2.17, R) >droSim1.chr2L 15914389 92 - 22036055 -----ACAUUAUCCAGACGCCCAUAUCAUGUUGGGCUAUCAUUGUCCGAUUUAUUGGCAACAAGGGCAUCGU-CGACCACUCGUCUUUCAUUCAUUCA---- -----.........((((((((.......(((((((.......)))))))...(((....))))))).....-.((....))))))............---- ( -22.50, z-score = -2.17, R) >droSec1.super_5 4927328 92 - 5866729 -----ACAUUAUCCAGACGCCCAUAUCAUGUUGGGCUAUCAUUGUCCGAUUUAUUGGCAACAAGGGCAUCGU-CGACCACUCGUCUUUCAUUCAUUCA---- -----.........((((((((.......(((((((.......)))))))...(((....))))))).....-.((....))))))............---- ( -22.50, z-score = -2.17, R) >droYak2.chr2L 3196010 92 + 22324452 -----ACAUUAUCCAGACGCCCAUAUCAUGUCGGGCUAUCAUUGCCCGAUUUAUUGGCAACAAGGGCAUCGU-CGACCACUCUCCUUUCAUUCACUCA---- -----..........(((((((.......(((((((.......)))))))...(((....)))))))...))-)........................---- ( -25.60, z-score = -3.73, R) >droEre2.scaffold_4929 7902361 92 - 26641161 -----ACAUUAUCCAGACGCCCAUAUCAUGUUGGGCUAUCGUUGUCCGAUUUAUUGGCAACAAGGGCAUCGU-CGACCACUCGUCUUUCAUUCAUUCA---- -----.........(((((((((........)))))....((.((((((((..(((....)))..).)))).-.))).))..))))............---- ( -22.70, z-score = -1.89, R) >droAna3.scaffold_12916 15993270 91 + 16180835 -----GCAUUAACCAAACGCCCAUAUCCUGUAGGGCUAUCACUGUCCGAUUUAUUACCACCCGGAGCAACCC-UUACCUCU-GCCUUGCACCCACCCA---- -----(((..........((((..........))))......((((((.............)))).))....-........-....))).........---- ( -13.12, z-score = -0.26, R) >dp4.chr4_group4 5163603 102 - 6586962 AUUUUGCAUUAACCAAACGCCCAUAUCCUGUAGAGCUAUCAUUGUCCGAUUUAUUGCCACCAAGGGCAAUGUGGGGCCACUUACUCCCGUACCUCUUGCUCG ................................((((...((((((((................)))))))).((((........)))).........)))). ( -20.19, z-score = 0.15, R) >droPer1.super_16 193854 102 + 1990440 AUUUUGCAUUAACCAAACGCCCAUAUCCUGUAGAGCUAUCAUUGUCCGAUUUAUUGCCACCAAGGGCAAUGUGGGGCCACUUACUCCCGUACCUCUUGCUCG ................................((((...((((((((................)))))))).((((........)))).........)))). ( -20.19, z-score = 0.15, R) >consensus _____ACAUUAUCCAGACGCCCAUAUCAUGUUGGGCUAUCAUUGUCCGAUUUAUUGGCAACAAGGGCAUCGU_CGACCACUCGCCUUUCAUUCACUCA____ ..................((((..........((((.......))))......(((....)))))))................................... (-13.26 = -13.66 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:30 2011