Locus 2083

Sequence ID dm3.chr2L
Location 16,179,211 – 16,179,337
Length 126
Max. P 0.950205
window2864

overview

Window 4

Location 16,179,211 – 16,179,337
Length 126
Sequences 14
Columns 129
Reading direction forward
Mean pairwise identity 84.29
Shannon entropy 0.37390
G+C content 0.35837
Mean single sequence MFE -30.65
Consensus MFE -17.89
Energy contribution -18.01
Covariance contribution 0.12
Combinations/Pair 1.43
Mean z-score -2.38
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.56
SVM RNA-class probability 0.950205
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16179211 126 + 23011544
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.70, z-score =  -3.10, R)
>droSim1.chr2L 15887854 126 + 22036055
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.70, z-score =  -3.10, R)
>droSec1.super_5 4900731 126 + 5866729
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.70, z-score =  -3.10, R)
>droYak2.chr2L 3167355 126 - 22324452
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.70, z-score =  -3.10, R)
>droEre2.scaffold_4929 7875401 126 + 26641161
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGUUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -28.30, z-score =  -2.29, R)
>droAna3.scaffold_12916 15966723 126 - 16180835
GUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUGCAUAUGGCUUCGUUUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
....(((((...(((((..((((((((......))))))).)..))))).)))))(((...(((((((((......)))))))))...)))....(((((...((((.....))))....))))).--- ( -36.40, z-score =  -4.30, R)
>dp4.chr4_group4 5121850 129 + 6586962
AGUUGAAUAUGUAUUCCUAGUUAUAUUCACAGCGGAAUGUGUUAUGAAAAUUGUAGCAUAUGGUUUUAUGUUACAUAAUGGUGCAUAUCUAAGAAAUGGAUGGAAUUUAUUAGAUUUUACAAUUGUAGU
(((((..((((((((.....(((((..((((......)))).)))))....(((((((((......)))))))))....))))))))(((((.((((.......)))).))))).....)))))..... ( -26.00, z-score =  -0.73, R)
>droPer1.super_16 136289 126 - 1990440
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUGUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUUUUAGAUUUACUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.80, z-score =  -2.72, R)
>droWil1.scaffold_180764 1641932 126 - 3949147
AUUUGAUUACUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUAUGGCUUCGUUUUACAUGACGGAGCCUUCUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
(((((....(..(((((..((((((((......))))))).)..)))))..).........(((((((((......))))))))).....)))))(((((...((((.....))))....))))).--- ( -32.90, z-score =  -3.43, R)
>droVir3.scaffold_12723 4126094 126 - 5802038
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUAUGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU---
............(((((..((((((((......))))))).)..)))))..(((((((...((((((((........))))))))...)).)))))((((...((((.....))))....))))..--- ( -30.60, z-score =  -2.92, R)
>droMoj3.scaffold_6500 9664205 126 + 32352404
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUAUGGCUUCGUGUUGCACGACGGAGCCUUCUGCAGAUCCGCAUUUAAUCUAUUAGAUUUAGUUGUGGU---
...(((......(((((..((((((((......))))))).)..)))))......)))...((((((((........))))))))..........(((((...((((.....))))....))))).--- ( -30.50, z-score =  -1.50, R)
>droGri2.scaffold_15252 8363483 126 - 17193109
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUAUGGCUUCGUGUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUACUAGAUUUACUUGUGGU---
............(((((..((((((((......))))))).)..)))))..(((((((...((((((((........))))))))...)).)))))((((...((((.....))))....))))..--- ( -30.70, z-score =  -2.53, R)
>anoGam1.chrU 19431235 126 - 59568033
CUUUGACUACUUCUUUACGUCGGUGUUCACUAUCGAAUUGCUGUUAAAGCUGGUAUCAUACGGAUUUUUGUUUCACGAUGGAGCAUUUUGUCGAUCAGCAUUCAAUUUGUUGGAUCUCCUAGUCGU---
....(((((......(((.((((((.....))))))...(((.....)))..)))......(((....((((((.....)))))).......((((((((.......)))).))))))))))))..--- ( -25.90, z-score =   0.21, R)
>triCas2.ChLG1X 1165240 126 + 8109244
AUUCGAUUACGUUUUUACGGCAAUAUUCUCAGCGGAGUUGCUUCUAAAGACAAUUUCCUACGGAUGCAUCCUGCACGACGGUGCCUUCUUGCGGUCGGCCUUCAACGUGCUAGACUUAGUAGUCGU---
...((((((((((((((.((((((.(((.....)))))))))..)))))))......(((.(((....))).(((((..((.(((..(.....)..)))..))..)))))))).....))))))).--- ( -34.20, z-score =  -0.66, R)
>consensus
AUUUGAUUAUUUUUUCACGGCAGUUUUCACAAUAGAACUGAUUCUGAAAUUGAUUUCAUACGGCUUCGUAUUACACGACGGAGCCUUUUGCAGAUCCGCAUUUAAUCUAUUAGAUUUACUUGUGGU___
...(((......(((((...((((..((......))))))....)))))......)))...((((((((........))))))))..........((((....((((.....)))).....)))).... (-17.89 = -18.01 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:25 2011