| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,151,781 – 16,151,879 |
| Length | 98 |
| Max. P | 0.538951 |
| Location | 16,151,781 – 16,151,879 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 62.93 |
| Shannon entropy | 0.79671 |
| G+C content | 0.51882 |
| Mean single sequence MFE | -26.66 |
| Consensus MFE | -4.82 |
| Energy contribution | -4.77 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16151781 98 - 23011544 --------GAAACUCCUCCCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC---CGUGGGGGCGAUCCGCCC---ACUUCCAAAAGGAAAUGAC --------............((.((((((((.((((((.((((..((....))..)))).))))))...---.))))(((((...)))))---.....)))).))....... ( -26.80, z-score = -2.61, R) >droSim1.chr2L 15867510 98 - 22036055 --------AAAACUCCUCCCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC---CGUGGGGGCGAUCCGCCC---ACUUCCAAAAGGAAAUGAC --------............((.((((((((.((((((.((((..((....))..)))).))))))...---.))))(((((...)))))---.....)))).))....... ( -26.80, z-score = -2.79, R) >droSec1.super_5 4880288 98 - 5866729 --------GAAACUCCUCCCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC---CGUGGGGGCGAUCCACCC---ACUUCCAAAAGGAAAUGAC --------.......(.(((((((........((((((.((((..((....))..)))).))))))...---.))))))).).......(---(.((((....)))).)).. ( -26.00, z-score = -2.53, R) >droYak2.chr2L 3146587 98 + 22324452 --------GAAACUCCUACCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC---CAUGGGGGCGAUCCGCCC---ACUUUCCAAAGGAAAUGAC --------.....((((...((((........((((((.((((..((....))..)))).))))))...---.))))(((((...)))))---.........))))...... ( -24.20, z-score = -1.93, R) >droEre2.scaffold_4929 7852222 97 - 26641161 --------GAAACUCCUCCCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC---UGUGGGGGCGAUACGCCC---ACUUCC-AAAGGAAAUGAC --------.....((((..........((((.((((((.((((..((....))..)))).))))))...---.))))(((((...)))))---......-..))))...... ( -27.40, z-score = -2.92, R) >droAna3.scaffold_12916 15945733 109 + 16180835 ACCCAUAUGGGACUCCUCCCCCAUUUGGCGCUCUUGACUUUUAAUGCCCAAGCUAUAAAUGUCAAGUCC---CGCGGGCUUGCCACGCCCCCGUCUACCAGAAGUAGAUGAC ...((.(((((........))))).))(((..((((((.((((..((....))..)))).))))))...---)))((((.......)))).(((((((.....))))))).. ( -36.30, z-score = -4.08, R) >dp4.chr4_group4 5097658 96 - 6586962 --------UCAGCCCCAGCCCCGUCUGCCACUCUUGACUUUUAAUGUCCCUGCUAUAAAUGUCAAGUCC---CGCGAGGGCGACACGCC-----CUCCCAGAAGGAAAUGAC --------.......((...((.(((((....((((((.((((..((....))..)))).))))))...---.))(((((((...))))-----)))..))).))...)).. ( -26.70, z-score = -2.31, R) >droPer1.super_16 106864 96 + 1990440 --------UCAGCCCCAGCCCCGUCUGCCACUCUUGACUUUUAAUGUCCCUGCUAUAAAUGUCAAGUCC---CGCGAGGGCGACACGCC-----CUCCCAGAAGGAAAUGAC --------.......((...((.(((((....((((((.((((..((....))..)))).))))))...---.))(((((((...))))-----)))..))).))...)).. ( -26.70, z-score = -2.31, R) >droWil1.scaffold_180764 1610429 97 + 3949147 -----------UAUGUACCUCCAUUUGCCACUCUUGACUUUUAAUGCUUGGGCUAUAAAUGUCAAGUCCCCGCACGGGGAAGGGAGACU----UCAACCCAAAGGAGAUGAC -----------.......((((.((((.....((((((.((((..((....))..)))).))))))(((((....)))))(((....))----).....))))))))..... ( -28.50, z-score = -1.53, R) >droMoj3.scaffold_6500 22724716 85 + 32352404 ----CUCUCUCCCACUCUCACUGUCUCUCUGCUGAGACUUUUAACGCGCCAGCUAUAAAUGUCAAGUCC---CGUGGGUAGAAGCUCAUGAC-------------------- ----...((((((((.......(((((......))))).......((....))................---.))))).)))..........-------------------- ( -19.70, z-score = -1.00, R) >droVir3.scaffold_12723 1708743 83 - 5802038 ----CGCACUCCUGCUGCCAC--ACCCACAUUUGAGACUUUUAAUGCGCCAGCUAUAAAUGUCAAGUGC---CGUGG----GGAGACGGGGAUGAA---------------- ----..((..((((((.((.(--((...(((((((.(.(((....((....))...)))).))))))).---.))))----).)).))))..))..---------------- ( -25.60, z-score = -1.11, R) >droGri2.scaffold_15252 8856932 101 - 17193109 --CACACUCGCUGGCUGCCAC--ACCCACGUUUGAGACCUCUAAUGCGCCAGCCAUAAAUGUCAAGUCG---UAUUGGAACGGGAACGGGAACGGAGUCGGGUUUGAC---- --..((..(.((((((.((..--..((.(((((..(...((((((((((..(.((....)).)..).))---))))))).)..)))))))...)))))))))..))..---- ( -25.20, z-score = 1.33, R) >consensus ________GAAACUCCUCCCCCAUUUGCCACUCUUGACUUUUAAUGCCCCAGCUAUAAAUGUCAAGUCC___CGUGGGGGCGAUACGCCC___ACUUCCAAAAGGAAAUGAC ...................................(((.((((..((....))..)))).)))................................................. ( -4.82 = -4.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:22 2011