| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,517,611 – 1,517,703 |
| Length | 92 |
| Max. P | 0.590304 |
| Location | 1,517,611 – 1,517,703 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 66.06 |
| Shannon entropy | 0.64589 |
| G+C content | 0.36435 |
| Mean single sequence MFE | -7.32 |
| Consensus MFE | -5.25 |
| Energy contribution | -4.23 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.30 |
| Mean z-score | 0.08 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1517611 92 - 23011544 -AAUCGCCCAUCUAAACGCUAUCGUAUUCAUAUA-CACACCCCCCCAACUAUACUUACAUACUCUGAGCAUGUGAAAUUAGAUCGUAAGCAAUG- -................(((...((((....)))-)............(((...((((((.(.....).))))))...)))......)))....- ( -10.20, z-score = -1.01, R) >droSec1.super_14 1464613 92 - 2068291 AAACUCCCUAUCUAAACUCUAUCGUACUCAUACA-CACACCCCCAC-ACUAUACUUACAUACUCUGAGCAUGUGAAAUUAGAUCGUAAGCAAAG- ...((..(.((((((..((...(((.((((....-...........-.................)))).))).))..)))))).)..)).....- ( -8.65, z-score = -1.03, R) >droYak2.chr2L 1494371 89 - 22324452 AAGCUUCUUACUCAAACUCUAUCGUAUUCAU-----ACACACACCCAACUAUUCUUACAUACUCUGAGCAUGUGAAGUUAGAUCGUAAGCAAAG- ......(((((............(((....)-----))..........(((...((((((.(.....).))))))...)))...))))).....- ( -9.10, z-score = 0.24, R) >droEre2.scaffold_4929 1566007 89 - 26641161 GAACUUCCCACCCAAACUCCACCGUAUUCAU-----ACACACUACCAACUAUUCUUACAUACUCUGAGCAUGUGAAGUUAGAUCGUAAGCAAAG- .((((((................(((....)-----))..................((((.(.....).))))))))))...............- ( -6.30, z-score = 0.60, R) >droAna3.scaffold_12916 14905712 79 - 16180835 --------------AAUUUCAAUUUAUACAUAGA--GCACAAACCCACCUAUUCUUACAUACUCUGAGCAUGUGAAAUUAGAUUUUAAGCGAUAA --------------(((((((...(((.(.((((--(........................))))).).))))))))))................ ( -5.46, z-score = 0.54, R) >dp4.chr4_group3 10089755 84 - 11692001 ---------AUGCUAACUCAACUCUAUUCGAACUCUACUCUGCUACCAUUGU-CAUACAUACUACAAGCAUGUGUAAUUAAUUUUUAAGCGAAA- ---------.((((........((.....))....(((.(((((.....((.-....)).......)))).).)))...........))))...- ( -6.10, z-score = 0.80, R) >droPer1.super_8 1295261 84 - 3966273 ---------AUCCUAACUCAACUCUAUUCGAACUCUACUCUGCUACCAUUGU-CAUACAUACUACAAGCAUGUGUAAUUAAUUUUUAAGCGAAA- ---------...............................((((...((((.-.((((((.(.....).))))))...)))).....))))...- ( -5.40, z-score = 0.42, R) >consensus _A____C__AUCCAAACUCUACCGUAUUCAUACA__ACACACCCCCAACUAUUCUUACAUACUCUGAGCAUGUGAAAUUAGAUCGUAAGCAAAG_ ................................................(((...((((((.(.....).))))))...))).............. ( -5.25 = -4.23 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:40 2011