| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,125,503 – 16,125,594 |
| Length | 91 |
| Max. P | 0.819252 |
| Location | 16,125,503 – 16,125,594 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.45797 |
| G+C content | 0.40505 |
| Mean single sequence MFE | -18.60 |
| Consensus MFE | -8.57 |
| Energy contribution | -9.44 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.819252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16125503 91 - 23011544 UUGCUUCGAACUUCCCUCGCUUUUCCCCACGUAUCUGUGUAUACGAAUGUAUGUAUGUGGUGGAGCAAUCAAAGCAAACAUCAAAUCAAAA ((((((.((.......))((...(((((((((((.((..(......)..)).)))))))).))))).....)))))).............. ( -20.50, z-score = -2.18, R) >droYak2.chr2L 3125327 85 + 22324452 UUGCUACGAACUUCCUUCGCUUU--CCCAUGUAAAUCUGUA----UACGUAUGUAUGUGGUGGAGCAAUCAAAGCAAACAUCAAAUCAAAA (((((..(((.....)))((((.--.(((((((.((.((..----..)).)).)))))))..))))......))))).............. ( -18.90, z-score = -2.49, R) >droSec1.super_5 4859113 91 - 5866729 UUGCUCCGAACUUCCCUCGCUUUUACCCACCUAUCUAUCUGUGUAUACGAAUGUAUGUGGUGGAGCACUCAAAGCAAACAUCAAAUCAAAA (((((..((.......))(((.....((((((((.(((.(((....))).))).))).))))))))......))))).............. ( -14.30, z-score = -0.60, R) >droSim1.chr2L 15845855 91 - 22036055 UUGCUCCGAACUUCCCUCGCUUUUACCCACGUAUCUAUCUGUGUAUACGAAUGUAUGUGGUGGAGCAAUCAAAGCAAACAUCAAAUCAAAA (((((((((.......))........((((((((...((.((....))))..)))))))).)))))))....................... ( -18.50, z-score = -1.81, R) >droAna3.scaffold_12916 15926296 78 + 16180835 UUGUUGUAGA--UCCCACACCCU--GGCAUGUUCCAGC---------CAUCCAAAUGUGGGAAAGCAAUCAAAGCAAACAUCAAAUCAAAA (((.(((...--(((((((...(--(((........))---------))......)))))))..((.......))..))).)))....... ( -18.80, z-score = -2.19, R) >droEre2.scaffold_4929 7832001 90 - 26641161 UUGCUACGAACUUCCUUCGCUUU-CCCCAUGUAUCCAUGUAUCUCUGUAUAUGUAUGCGGUGGAGCAAUCAAAGCAAACAUCAAAUCAAAA (((((..(((.....)))((((.-.((...((((.(((((((....))))))).))))))..))))......))))).............. ( -20.60, z-score = -2.98, R) >consensus UUGCUACGAACUUCCCUCGCUUU__CCCACGUAUCUAUGUAU_U_UACGUAUGUAUGUGGUGGAGCAAUCAAAGCAAACAUCAAAUCAAAA (((((..((.......))(((((...((((((((..................)))))))).)))))......))))).............. ( -8.57 = -9.44 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:21 2011