| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,125,340 – 16,125,402 |
| Length | 62 |
| Max. P | 0.985972 |
| Location | 16,125,340 – 16,125,402 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 93.55 |
| Shannon entropy | 0.12581 |
| G+C content | 0.45031 |
| Mean single sequence MFE | -11.32 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.12 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16125340 62 - 23011544 AUUUCCACUCAAUCCACUCCAGCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG .....................((((((.........))))))(((((.........))))). ( -11.20, z-score = -2.07, R) >droSim1.chr2L 15845691 62 - 22036055 AUUUCCACUCAAUCCACUCCAGCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG .....................((((((.........))))))(((((.........))))). ( -11.20, z-score = -2.07, R) >droSec1.super_5 4858950 62 - 5866729 AUUUCCACUCAAUCCACUCCAGCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG .....................((((((.........))))))(((((.........))))). ( -11.20, z-score = -2.07, R) >droYak2.chr2L 3125165 61 + 22324452 AUUUCCACUCAAUCCACUCC-GCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG ....................-((((((.........))))))(((((.........))))). ( -11.20, z-score = -2.41, R) >droEre2.scaffold_4929 7831857 62 - 26641161 AUUUCCACUCAAUCCACUCCAGCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG .....................((((((.........))))))(((((.........))))). ( -11.20, z-score = -2.07, R) >droAna3.scaffold_12916 15925931 55 + 16180835 -------CUCAAUCCAUUUCAGCAGCCUCAAUCUCGGGCUGUCAUUGAUUACAUAACAAUGG -------..............(((((((.......)))))))(((((.........))))). ( -11.90, z-score = -2.37, R) >consensus AUUUCCACUCAAUCCACUCCAGCAGCCUCAAUCCCUGGCUGUCAUUGAUUACAUAACAAUGG .....................((((((.........))))))(((((.........))))). (-11.12 = -11.12 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:20 2011