| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,052,961 – 16,053,053 |
| Length | 92 |
| Max. P | 0.882836 |
| Location | 16,052,961 – 16,053,053 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 68.62 |
| Shannon entropy | 0.62750 |
| G+C content | 0.31287 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -5.82 |
| Energy contribution | -6.79 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.59 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882836 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 16052961 92 - 23011544 AAAUAAAAUCGGGGCAUGAUUGGAUAAAC-AUCUAUUUAUGCAAUAAAUAUUAAAUGCAAGGCAGAAACCAAGACUAAUUC--AGUUAUGCCAAU ............(((((((((((((....-.........((((............)))).((......)).......))))--)))))))))... ( -20.50, z-score = -2.79, R) >dp4.chr4_group4 4916283 80 - 6586962 -------------CAAUUAAUGCCUAAAUGAAC--AUUGUAGCACUAAGGAUAAAUGUUAAAUGAAUACCUAAACUAACCCCUAAUCGUGGGUAU -------------......(((((((.......--....(((.....(((((..((.....))..)).)))...)))...........))))))) ( -7.95, z-score = 0.90, R) >droAna3.scaffold_12916 15856481 81 + 16180835 -----------GGGCAGCUUCGUGCAUUUAAUUCGAUUAUGCCAUAAAUAUUAAAUGGCUAUCAAAAAUUAA-ACUAAUGC--AGUAAAUACAAU -----------..(((((.....)).(((((((.(((...(((((.........))))).)))...))))))-)....)))--............ ( -13.30, z-score = -0.40, R) >droEre2.scaffold_4929 7752317 91 - 26641161 AAAUAAAUUCGAGGCAUAAUGGGAUAAAC-AUUUAAUUAUCCAAUAAAUAUUAAAUGCCCGGGAG-AACCAAGACUAACCC--AGUUAUGCCAAU ............(((((((((((.....(-(((((((............))))))))...((...-..))........)))--).)))))))... ( -22.40, z-score = -3.44, R) >droYak2.chr2L 3044462 92 + 22324452 AAAUAAGUUCGGGGCAUAAUAGGAUAAGC-AUUUAAUUAUCCAAUAAAUAUUAAAUGCCAGGCAGAAACCAAUACUAACCC--AGUUAUGCCAAA ............((((((((.((....((-(((((((............)))))))))..((......)).........))--.))))))))... ( -21.90, z-score = -2.98, R) >droSec1.super_5 4786380 92 - 5866729 AAAUAAAAUCGGGGCAUGAUUGGAUAAAC-AUUUAAUUAUCCAAUAAAUAUUAAAUGCCAGGCAGAAACCAAGUCUAAUUC--AGUUAUGCCAAU ............(((((((((((((...(-(((((((............))))))))..((((.........)))).))))--)))))))))... ( -22.80, z-score = -3.40, R) >droSim1.chr2L 15770701 92 - 22036055 AAAUAAAAUCGGGGCAUGAUUGGAUAAAC-AUUUAAUUAUCCAAUAAAUAUUAAAUGCCAGGCAGAAACCAAGACUAAUUC--AGUUAUGCCAAU ............(((((((((((((...(-(((((((............))))))))...((......)).......))))--)))))))))... ( -22.00, z-score = -3.29, R) >consensus AAAUAAAAUCGGGGCAUGAUUGGAUAAAC_AUUUAAUUAUCCAAUAAAUAUUAAAUGCCAGGCAGAAACCAAGACUAAUCC__AGUUAUGCCAAU ............((((((((.((((((.........)))))).............(((...)))....................))))))))... ( -5.82 = -6.79 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:14 2011