Locus 2072

Sequence ID dm3.chr2L
Location 16,052,142 – 16,052,261
Length 119
Max. P 0.576995
window2851

overview

Window 1

Location 16,052,142 – 16,052,261
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 92.61
Shannon entropy 0.10032
G+C content 0.33439
Mean single sequence MFE -23.90
Consensus MFE -20.49
Energy contribution -21.27
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.576995
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 16052142 119 - 23011544
UAAUCUCUGGGUUAGCCAAAUUUUUAAGCUUAUGCAUGUAAAAUAAUACGAAUCCAAAAGGGAGCUCAUUAUACUGUAACUUUGGUAAUGGGUGACAAACUAGAUGAAAAUAAGCUAGU
(((((....)))))............(((((((.(((.((............(((.....)))(((((((((............))))))))).......)).)))...)))))))... ( -21.90, z-score =  -0.18, R)
>droSec1.super_5 4785549 114 - 5866729
UAAUCUCUG-----GCCACAUUUUUGAGCUUAUGCAUGUAAAAUAAUACGAAUCCGAAAGGAAGCUCAUUAUACUGAAACUUUGGUAAUGGAUGACAAACUACAUGAAAAUAAGCUAGU
.........-----............(((((((.((((((............(((....))).(.(((((.(((..(....)..)))...))))))....))))))...)))))))... ( -26.70, z-score =  -3.09, R)
>droSim1.chr2L 15769877 114 - 22036055
UAAUCUCUG-----GCCACAUUUUUGAGCUUAUGCAUGUAAAAUAAUACGAAUCCAAAAGGAAGCUCAUUAUACUGAAACUUUGGUAAUGGGUGACAAACUACACGAAAAUAAGCUAGU
......(((-----((...(((((((.((....)).((((............(((....))).((((((..(((..(....)..))))))))).......)))))))))))..))))). ( -23.10, z-score =  -1.63, R)
>consensus
UAAUCUCUG_____GCCACAUUUUUGAGCUUAUGCAUGUAAAAUAAUACGAAUCCAAAAGGAAGCUCAUUAUACUGAAACUUUGGUAAUGGGUGACAAACUACAUGAAAAUAAGCUAGU
..........................(((((((.((((((............(((....))).(((((((((............))))))))).......))))))...)))))))... (-20.49 = -21.27 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:13 2011