| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,491,908 – 1,492,055 |
| Length | 147 |
| Max. P | 0.518665 |
| Location | 1,491,908 – 1,492,055 |
|---|---|
| Length | 147 |
| Sequences | 5 |
| Columns | 149 |
| Reading direction | forward |
| Mean pairwise identity | 83.60 |
| Shannon entropy | 0.29169 |
| G+C content | 0.45049 |
| Mean single sequence MFE | -42.13 |
| Consensus MFE | -23.61 |
| Energy contribution | -24.01 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1491908 147 + 23011544 UUAUACGAAUUUUAAAGCGCCAAGCAUCGGUAAGUUUCGGAACUAAUACACUGUCAUGUAGAAUUAUAUUUUACGUUGACUUUCUACGU--CGACGUCUACACCAACAGCUUGGGUUGUCUUCCGCCUAGGUGGCGCUUCUAUCAGCUU ..............((((((((((..((((......))))..))......((((..((((((...........(((((((.......))--)))))))))))...))))(((((((.(....).))))))))))))))).......... ( -37.60, z-score = -1.54, R) >droEre2.scaffold_4929 1540693 146 + 26641161 UUACAAGACUUUCGAAGCGCCGCACAUCGGCGAGUUUCGGAACCAGUAAACUGUCGUGUAGAACUACAUUUUACGUAGACUUUCUACAG--CGACCUCUACAGCAACAGCUUGGGCUGCCUGCCGCCUAGGUGGCGCUU-UAGCAGCGC .........(((((((((((((.....))))..)))))))))((((((....(((((((((((((((.......))))...))))))).--))))...)))(((....))))))(((((.((((((....))))))...-..))))).. ( -51.40, z-score = -2.13, R) >droYak2.chr2L 1468604 144 + 22324452 CUACAAAUGUUUUAAAGCGCCAAACAUCGGCAAGUUUCGGAACCAGAAAACUGUCAUGUAGAA-UACAUUUUACGCACACUUUCUACACACAAACAUCUACA----CAGCUUGGCUUGCCUUCCGCCUAGGUGGCGCUUCUAACAGCUU .......((((...((((((((......((((((((..((....(((....(((..(((((((-.................))))))).)))....)))...----...)).))))))))..((.....))))))))))..)))).... ( -35.43, z-score = -2.35, R) >droSec1.super_14 1439059 149 + 2068291 UUAUACGACUUUUAAAGCGCCAAGCAUCGGUAAGUUUCCGAACUAGUAGACUGUCAUGUAGAACUAUAUUUUACGUUGACUUUCUACGUGCCGACGUCUACAGCAACAGUUUGCGUUAUCUUCCGCCUAGGUGGCGCUUCUAUCAGCUU ..............(((((((((((.((((((((((....)))).(((((..(((((((((((.....))))))).))))..))))).))))))........((((....))))))).....((.....)))))))))).......... ( -41.80, z-score = -1.89, R) >droSim1.chr2L 1466954 149 + 22036055 UUAUACGAAUUUUAAAGCGCCAAGCAUCGGUAAGUUUCGGAACUAGUAGACUGUCAUGUAGAACUAUAUUUUACGUUGACUUUCUACGUGCCGACGUUUACAGCAACAGUUUGCGUUAUCUCCCGCCUAGGUGGCGCUUCUAUCAGCUU ..............(((((((((((....(((((..((((.....(((((..(((((((((((.....))))))).))))..)))))...))))..))))).((((....))))))).....((.....)))))))))).......... ( -44.40, z-score = -2.53, R) >consensus UUAUACGAAUUUUAAAGCGCCAAGCAUCGGUAAGUUUCGGAACUAGUAAACUGUCAUGUAGAACUAUAUUUUACGUUGACUUUCUACGU_CCGACGUCUACAGCAACAGCUUGGGUUGUCUUCCGCCUAGGUGGCGCUUCUAUCAGCUU ..............((((((((......((((((((....))).......((((..((((((..........((((.(.....).)))).......))))))...))))......)))))..((.....)))))))))).......... (-23.61 = -24.01 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:39 2011