| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,015,273 – 16,015,385 |
| Length | 112 |
| Max. P | 0.508424 |
| Location | 16,015,273 – 16,015,385 |
|---|---|
| Length | 112 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.34427 |
| G+C content | 0.35532 |
| Mean single sequence MFE | -16.66 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.56 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16015273 112 - 23011544 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA-UAUUCUCCG--UCUCUAGGCAGCAAUUGCUUGCCUUCCCCCAUAC----- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).))))..(--((....))).)))))))))...............----- ( -17.50, z-score = -1.31, R) >droSim1.chr2L 15730103 107 - 22036055 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA-UAUUCUCCG--UCUCUAGGCAGCAAUUGCUUGCCUUCCCC---------- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).))))..(--((....))).)))))))))..........---------- ( -17.50, z-score = -1.30, R) >droSec1.super_5 4748778 107 - 5866729 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA-UAUUCUCCG--UCUCUAGGCAGCAAUUGCUUGCCUUACCC---------- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).))))..(--((....))).)))))))))..........---------- ( -17.50, z-score = -1.35, R) >droYak2.chr2L 3005637 118 + 22324452 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAAUUAUUCUCCG--UCUCUAGGCAUCAAUUGCUUUCCUUCGCCCUACUUACAU ...((((((((..(((((((.((((..............((((.........)))).......)))).))).))))..(--((....)))..)))))))).................... ( -12.40, z-score = 0.09, R) >droEre2.scaffold_4929 7714861 117 - 26641161 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA-UAUUCUCCGUCUCUCUAGGCAGCAAUUGCUUUCCUUCCCUUUACAUAC-- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).))))..((((....)))).)))))))))..................-- ( -17.90, z-score = -2.03, R) >dp4.chr4_group4 4866537 107 - 6586962 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAA-UAUUCUCUG--UCUCUAGGCAGCAAUUGCUUUCGUUGUUU---------- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).)))).((--((....)))))))))))))..........---------- ( -18.00, z-score = -1.02, R) >droPer1.super_49 305356 107 + 569410 UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAA-UAUUCUCUG--UCUCUAGGCAGCAAUUGCUUUCGUUGUUU---------- ...(((((((((.((((.((.((((..............((((.........)))).......)))).)-).)))).((--((....)))))))))))))..........---------- ( -18.00, z-score = -1.02, R) >droAna3.scaffold_12916 15820349 100 + 16180835 UUGGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA-UAUUCUUCG--UCUCUAGGCAGCAAUUGCUUUC----------------- ..(((((((((((((((.((.((((..............((((.........)))).......)))).)-).))))).(--((....))).))))))))))..----------------- ( -18.80, z-score = -1.83, R) >droWil1.scaffold_180772 6543696 91 - 8906247 ---GGUAAUUGCAAGAAAAUCUCAUUUAAUCCCACCAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAA-UAUUCU--------CUAGGCAGCAAUUGCUAUC----------------- ---(((((((((..((.....))................((((.........)))).............-......--------.......)))))))))...----------------- ( -13.90, z-score = -1.07, R) >droVir3.scaffold_12723 3882507 91 + 5802038 UUGGGUAAUUGCAAGAAAAUCUUAUUUAAUCCCAGCAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAA-CAUUU--------UCGAGGCAGCAAUUGCU-------------------- ...((((((((((((.....)))...........((...((((.........))))........((((.-....)--------)))..)).)))))))))-------------------- ( -16.80, z-score = -0.65, R) >droMoj3.scaffold_6500 9408968 92 - 32352404 UUGGGUAAUUGCAAGAAAAUCCUAUUUAAUCCCAGCAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAA-UAUUC--------ACGAAACAGCGAUUGCUU------------------- ..((((((((((...........................((((.........)))).....(..(((..-...))--------)..)....))))))))))------------------- ( -14.50, z-score = -0.54, R) >droGri2.scaffold_15252 8189267 90 + 17193109 UUGGGUAAUUGCAGGAAAAUCUUAUUUAAUCCUAGCAAAUGCGACUUUAUCACGCAAAAAAUUAUGAAG-UUUUU---------CAAGACAGCAAUUGCU-------------------- ...(((((((((((((.............)))).((....))((((((((.............))))))-))...---------.......)))))))))-------------------- ( -17.14, z-score = -1.03, R) >consensus UUCGGUAAUUGCAAGAAAAUCUCAUUUAAUCCCAACAAAUGCGACUUCAUCACGCAAAAAAUUAUGAAA_UAUUCUCCG__UCUCUAGGCAGCAAUUGCUUUC_UU______________ ...(((((((((...........................((((.........)))).........(((....)))................))))))))).................... (-12.69 = -12.56 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:09 2011