| Sequence ID | dm3.chr2L |
|---|---|
| Location | 16,003,100 – 16,003,217 |
| Length | 117 |
| Max. P | 0.584374 |
| Location | 16,003,100 – 16,003,217 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Shannon entropy | 0.59754 |
| G+C content | 0.62576 |
| Mean single sequence MFE | -43.89 |
| Consensus MFE | -17.88 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 16003100 117 - 23011544 CCGCUUGACCUACGGCCCCGUGGGUCCCCUGCUGCCCUGCAUGAAAUGCACCUGCAACUGCGGAUGUUGCAGCGGCGGUUGUGCGCCACCUUUCUAUUUUGUGCCGAACAAAUGCAA ..((..((((((((....))))))))....(((((((((((......(((.((((....)))).)))))))).))))))(((.((.(((...........))).)).)))...)).. ( -42.40, z-score = -1.68, R) >droEre2.scaffold_4929 7699972 117 - 26641161 CCGCCUGACCUGCGGUCCCGUGGGUCCCUUGCUGCCCUGCAUGAAGUGCACCUGCAACUGCGGAUGUUGCAGCGGCGGCUGUGCGCCGCCCUUCUAUUUUGUGCCGAACAAAUGCAA ..((..((((..((....))..))))....)).....(((((...(.(((((((((((.......))))))).((((((.....))))))..........)))))......))))). ( -46.30, z-score = -1.67, R) >droYak2.chr2L 2993385 117 + 22324452 CCGCCUGACCUGCGGUCCCGUGGGUCCCCUGCUGCCCUGCAUGAAAUGCACCUGCAACUGCGGAUGUUGCAGCGGCGGCUGUGCGCCGCCCUUCUAUUUUGUGCCGAACAAAUGCAA ..((..((((..((....))..))))....)).....(((((.....(((((((((((.......))))))).((((((.....))))))..........)))).......))))). ( -45.90, z-score = -2.00, R) >droSec1.super_5 4736672 117 - 5866729 CCGCUUGACCUGCGGCCCCGUGGGUCCCCUGCUGCCCUGCAUGCAGUGCACCUGCAACUGCGGAUGUUGCAGCGGCGGUUGUGCGCCACCUUUCUAUUUUGUGCCGAACAAAUGCAA (((((.((((..((....))..))))....(((((...(((((((((((....)).)))))..)))).))))))))))((((.((.(((...........))).)).))))...... ( -45.10, z-score = -1.01, R) >droSim1.chr2L 15717918 117 - 22036055 CCGCUUGACCUGCGGCCCCGUGGGUCCCCUGCUGCCCUGCAUGCAGUGCACCUGCAACUGCGGAUGUUGCAGCGGCGGUUGUGCGCCACCUUUCUAUUUUGUGCCGAACAAAUGCAA (((((.((((..((....))..))))....(((((...(((((((((((....)).)))))..)))).))))))))))((((.((.(((...........))).)).))))...... ( -45.10, z-score = -1.01, R) >dp4.chr4_group4 4851591 117 - 6586962 CGCCCUGACCAGUGGUCCCGUCGGACCCGUCCUGCCGUGCAUGAAGUGCAUGAACUGCAACGGCAGCUGCACCGGCAGCUGUGCCCCGCCCUUCUACUUCGUGCCCAACAGGUGCGG (((((((..(((.(((((....)))))....)))..(.((((((((((...(((..((...(((((((((....)))))..))))..))..))))))))))))).)..)))).))). ( -48.80, z-score = -1.87, R) >droPer1.super_49 288453 117 + 569410 CGCCCUGACCAGUGGUCCCGUCGGACCCGUCCUGCCGUGCAUGAAGUGCAUGAACUGCAACGGCAGCUGCACCGGCAACUGUGCCCCGCCCUUCUACUUCGUGCCCAACAGGUGCGG (((((((..(((.(((((....)))))....)))..(.((((((((((((.....)))...(((.(..((((.(....).))))..)))).....))))))))).)..)))).))). ( -46.10, z-score = -1.66, R) >droAna3.scaffold_12916 15809372 114 + 16180835 CCGCCUUAGCUGCGGGCCGGUGGGCCCGGUCCUGCCCUGUAUGAAGUGCAC---CUGCAGCGCAUGCUGCCCCAGCAACUGUGCCCCUCCCUUCUACUUCGUGCCCAAUAAGUGCCG ..((((((...(((((((((.....)))).)))))...(((((((((((..---..)).((((((((((...)))))..)))))...........)))))))))....)))).)).. ( -41.70, z-score = -1.16, R) >droWil1.scaffold_180772 2374630 114 + 8906247 CCGCCUAAGCAGCGGUCCAGUUGGACCAGUCCUUCCCUGCAUGGAAUGCAC---CUGCACCGCCUGUUGUCCCAGCAAUUGUGCCCCGCCCUUCUAUUUCGUGCCCAAUAAAUGCGC ........(((..(((((....)))))...........((((((((((...---..((...(((.(((((....))))).).))...)).....))))))))))........))).. ( -29.20, z-score = -0.52, R) >droVir3.scaffold_12723 3864294 108 + 5802038 UCACCUUACGAGCGGGCCUUGCGGCCCAGUUCUGCCAAGCAUGGAACG---------CUGCGGCUGCUGCGAUUGCGGCUGCUGUCCGCCUUUUUAUUUUGUGCCCAACAGGUGCGC .(((((...(((((((((....))))).)))).((((((.((((((.(---------(.(((((.(((((....))))).)))))..))..)))))))))).)).....)))))... ( -42.00, z-score = -0.36, R) >droMoj3.scaffold_6500 9391521 108 - 32352404 UCGCCUGACAAGCAGCCCCUGUGGCCCAGUGCUGCCCAGCCUGGAUCG---------GUGCGGGUGCUGCCAGUGCGGCUGCUAUCCGCCAUUUUAUUUUGUGGCCAACAGGUGCGC .((((((...(((((((((((..((((.(..(((.((.....))..))---------)..).)).))..).)).).)))))))....(((((........)))))...))))))... ( -47.60, z-score = -0.91, R) >droGri2.scaffold_15252 8175416 108 + 17193109 UCGCUUGGCCAGCGGACCCUGCGGUCCGCUACUGCCCUGCAUGGAGUG---------CUGCGGCUGCUGUGACUGCGGCUGCUGUCCGCCAUUUUAUUUUGUGCGAAACAGAUGCGC ..((..(((.((((((((....))))))))...)))..))((((.(..---------(.((((((((.......)))))))).)..).))))........(((((.......))))) ( -46.50, z-score = -2.00, R) >consensus CCGCCUGACCAGCGGUCCCGUGGGUCCCGUGCUGCCCUGCAUGAAGUGCAC___CAACUGCGGAUGCUGCAGCGGCGGCUGUGCGCCGCCCUUCUAUUUUGUGCCCAACAAAUGCGA ...........((((.((....)).))...........((((((((((...........((((.(((((...))))).))))............)))))))))).........)).. (-17.88 = -17.45 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:09 2011