| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,997,625 – 15,997,715 |
| Length | 90 |
| Max. P | 0.976998 |
| Location | 15,997,625 – 15,997,715 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 71.88 |
| Shannon entropy | 0.37776 |
| G+C content | 0.50539 |
| Mean single sequence MFE | -31.03 |
| Consensus MFE | -18.67 |
| Energy contribution | -20.23 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15997625 90 - 23011544 --------ACUGUUUUUCGCA-ACUUGCCCUGCACUUUUGAGGUCAUCCUGGGAGUCUCUUAGGAUGUCCUUAGACUUGUCAGCGGCUCCUUCUGUUGG --------...........((-((..((((((((..(((((((.(((((((((.....))))))))).)))))))..)).))).))).......)))). ( -34.50, z-score = -4.04, R) >droAna3.scaffold_12916 15804796 99 + 16180835 GCCGUCUUCCUUUCGUUGGGAUACUUCGCCCAUAGUUUUGAGGUCAUCCUGCAAGUCCCUGAGGAUGGUCUUAAUGUCGUCCGUUGACACUGAUGUUGG ..((((..........((((........)))).....(((((..((((((.((......))))))))..)))))(((((.....)))))..)))).... ( -27.40, z-score = -0.85, R) >droSec1.super_5 4731123 90 - 5866729 --------GCUGUUUUUCGCA-ACUUGCCUUGCACUUUUGAGGUCAUCCUGGGAGUCCCUUAGGAUGUCCUUAGACUUGUCAGCGGCUCCUUCUGUUGG --------...........((-((..((((((((..(((((((.(((((((((.....))))))))).)))))))..)).))).))).......)))). ( -31.20, z-score = -2.67, R) >consensus ________ACUGUUUUUCGCA_ACUUGCCCUGCACUUUUGAGGUCAUCCUGGGAGUCCCUUAGGAUGUCCUUAGACUUGUCAGCGGCUCCUUCUGUUGG ...............................(((..(((((((.(((((((((.....))))))))).)))))))..)))((((((......)))))). (-18.67 = -20.23 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:06 2011