| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,987,485 – 15,987,554 |
| Length | 69 |
| Max. P | 0.668591 |
| Location | 15,987,485 – 15,987,554 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 71.62 |
| Shannon entropy | 0.53147 |
| G+C content | 0.36727 |
| Mean single sequence MFE | -14.50 |
| Consensus MFE | -8.77 |
| Energy contribution | -11.35 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15987485 69 + 23011544 UAUUUUAAGGUGGUUACGGUGCCAGCCGAGGCUUAAAUAUUACUUUCGAGUAAAUUGCA---CCAAAAUAUG ........((((((..((((....))))..)).......(((((....)))))....))---))........ ( -15.20, z-score = -1.17, R) >droYak2.chr2L 2978080 69 - 22324452 UAUUUUAAGGUGGUUAUGCUGCCUGCCGAGGCUUAAAAAUUACUUUAGAGUGAAAUGCA---CCAAAAUAUG (((((((((((((((.....((((....)))).....))))))))))))))).......---.......... ( -17.50, z-score = -2.23, R) >droEre2.scaffold_4929 7684754 67 + 26641161 UAUUUUAAGGUGGUUAUGGUGCCUGCCGAGGCUUAAAUAUUACUGUAGAGUAAAAUUCG---CAAAAAUA-- (((((((.((((((......((((....))))......)))))).))))))).......---........-- ( -14.20, z-score = -1.03, R) >droSec1.super_5 4720896 69 + 5866729 UAUUUUAAGGUGGUUACUGUGCCUGCCGUGGCUUAAAUAUUACUUUAGGGUAUAUUGCA---CCAAAAUAUG ((((((((((((((......(((......)))......)))))))))))))).......---.......... ( -15.70, z-score = -0.59, R) >droSim1.chr2L 15701998 69 + 22036055 UAUUUUAAGGUGGUUACUGUGCCUGCCGUGGCUUAAAUAUUACUUUAGGGUAAAUUGCA---CCAAAAUAUG ((((((((((((((......(((......)))......)))))))))))))).......---.......... ( -15.90, z-score = -0.79, R) >dp4.chr4_group4 4828807 58 + 6586962 --------------UACCAAGAACUAAUCGGUGUCGGUGUUUUUUUCGGCUGAAUUGGGGAUCUAAAAUAUG --------------.....(((.(((((((((..(((........))))))).)))))...)))........ ( -8.50, z-score = 0.45, R) >consensus UAUUUUAAGGUGGUUACGGUGCCUGCCGAGGCUUAAAUAUUACUUUAGAGUAAAUUGCA___CCAAAAUAUG ((((((((((((((......(((......)))......)))))))))))))).................... ( -8.77 = -11.35 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:44:04 2011