| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,490,348 – 1,490,439 |
| Length | 91 |
| Max. P | 0.573973 |
| Location | 1,490,348 – 1,490,439 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 73.03 |
| Shannon entropy | 0.53255 |
| G+C content | 0.47576 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -14.59 |
| Energy contribution | -14.38 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1490348 91 - 23011544 GGUCACAGCUGCCGCCUCGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCAGCGUCAGCUGGUGACAUCUUUUCUUUCGCCACACUUGC----------- .((((((((((.(((.((((...))))...((((((.........).))))).))).))))).))))).......................----------- ( -24.70, z-score = -0.96, R) >dp4.chr4_group3 10048197 88 - 11692001 GGUCACAGCUGCCGUCUUGAUGCGUGGUUCCACAUCAAAUAUUAAGAUUGUUUGGGACAGCUGGUGACAACUCUG-UCGCAGACUUUUU------------- ((((.(((((((((((((((((..((((.....))))..)))))))))......)).))))))((((((....))-)))).))))....------------- ( -31.80, z-score = -3.22, R) >droPer1.super_8 1253506 88 - 3966273 GGUCACAGCUGCCGUCUUGAUGCGUGGUUCCACAUCAAAUAUUAAGAUUGUUUGGGACAGCUGGUGACAACUCUG-UCGCAGACUUUUU------------- ((((.(((((((((((((((((..((((.....))))..)))))))))......)).))))))((((((....))-)))).))))....------------- ( -31.80, z-score = -3.22, R) >droSim1.chr2L 1465424 89 - 22036055 GGUCACAGCUGCCGCCUCGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCUGCGUCAGCUGGUGACAUCUUU--UUUCGCCACACUUGC----------- .((((((((((.(((.((((...))))...((((((.........).))))).))).))))).)))))......--...............----------- ( -24.00, z-score = -0.78, R) >droSec1.super_14 1437555 89 - 2068291 GGUCACAGCUGCCGCCUCGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCUGCGUCAGCUGGUGACAUCUUU--UUUCGCCACACUUGC----------- .((((((((((.(((.((((...))))...((((((.........).))))).))).))))).)))))......--...............----------- ( -24.00, z-score = -0.78, R) >droYak2.chr2L 1467003 90 - 22324452 GGUCACAGCUGCUGCCUUGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCUGCGUCAGCUGGUGACAUCUUUU-UUACGCCACACUUGC----------- .((((((((((.(((.(..(...)..)...((((((.........).))))).))).))))).))))).......-...............----------- ( -19.90, z-score = 0.64, R) >droEre2.scaffold_4929 1539078 88 - 26641161 GGUCACAGCUGCUG-CUUGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCUGCGUCAGCUGGUGACAUC-UUU-UUACGCCACACUUGC----------- .((((((((((.((-((..(...)..)...((((((.........).))))).))).))))).)))))...-...-...............----------- ( -20.30, z-score = 0.56, R) >droAna3.scaffold_12916 4954232 93 - 16180835 GGUCACAGCUGCUGCCACACUGCGUGUUUCGACAUCAAAUAUUAAGAUUUCGUUCGACAGCUGGUGACAUCUUCGUUUUUAUGCCGCUUAUGG--------- .(((((((((((...(((.....)))...(((.(((.........))).)))...).))))).))))).........................--------- ( -18.60, z-score = 0.72, R) >droGri2.scaffold_15252 10619083 101 - 17193109 -GUCGCAGCUGCUGUUUGAAUGCGACGUGUGACAUCAAAUAUUAAGAUUGAAAAUGGCAGCUGGUGACAUGUCUCACAGUAUUCACUUGCUGUUGUAUUUGG -((((((((((((((((.....(...((((........))))...).....))))))))))).))))).......((((((......))))))......... ( -29.10, z-score = -1.01, R) >droVir3.scaffold_12963 7498851 88 - 20206255 GGUCGCAGCUGCUGUGCGAGUGCGACGUGUGACAUCAAAUAUUUAGAUUGAAAACGGCAGCUGGUGACAUGUUUU-CAGUUGUAUUUCG------------- .((((((((((((((.(((...(...((((........))))...).)))...))))))))).))))).......-.............------------- ( -25.60, z-score = -0.47, R) >consensus GGUCACAGCUGCCGCCUCGCUGCGUGAUUCGACAUCAAAUAUUAAGAAUGUCUGCGUCAGCUGGUGACAUCUUUU_UUGCGCCACACUUGC___________ .((((((((((((((......)))((((.....))))..................).))))).))))).................................. (-14.59 = -14.38 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:38 2011