| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,976,497 – 15,976,592 |
| Length | 95 |
| Max. P | 0.776257 |
| Location | 15,976,497 – 15,976,592 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 94.36 |
| Shannon entropy | 0.09932 |
| G+C content | 0.33313 |
| Mean single sequence MFE | -20.34 |
| Consensus MFE | -18.90 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.776257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15976497 95 - 23011544 UGUUUUAGU--CCAGAUUAAUGUUCAUAAUCAAUAUGGUUGAAAUGUUAAAUUGAAUAUUAUCUGACAGGGCUUAGAAAAUUAGUUGCUCCUGCUCG .........--.(((((.((((((((.....(((((.......)))))....))))))))))))).((((((..............)).)))).... ( -19.14, z-score = -1.26, R) >droEre2.scaffold_4929 7673804 97 - 26641161 UGUCUUAGUCCCCAGAUUAAUGUUCAAAAUCAAUAUGGUUGAAAUGCUAAAUUGAAUAUUAUCUGACAGGGCCUAGAAAACGACUUGGUCCUGCUCG ............(((((.(((((((((........((((......))))..)))))))))))))).(((((((.((.......)).))))))).... ( -23.30, z-score = -2.26, R) >droYak2.chr2L 2966153 95 + 22324452 UGCUUUAGU--CCGGAUUAAUGUUCAUAAUCAAUAUGGUUGAAAUGCUAAAUUGAAUAUUAUCUGACAGGGCUUAGAAAAUUAGUUGGUCCUGCUCG .........--.(((((.(((((((((((((.....)))))...........))))))))))))).(((((((.............))))))).... ( -19.22, z-score = -0.78, R) >droSec1.super_5 4709688 95 - 5866729 UGUUUUAGU--CCAGAUUAAUGUUCAUAAUCAAUAUGGUUGAAAUGUUAAAUUGAAUAUUAUCUGACAGGGCUUAGAAAAUUAGUUGGUUCUGCUCG .......((--(.((((.((((((((.....(((((.......)))))....))))))))))))))).((((..((((..........)))))))). ( -18.80, z-score = -1.17, R) >droSim1.chr2L 15689574 95 - 22036055 UGUUUUAGU--CCAGAUUAAUGUUCAUAAUCAAUAUGGUUGAAAUGUUAAAUUGAAUAUUAUCUGACAGGGCUUAGAAAAUUAGUUGGUCCUGCUCG .........--.(((((.((((((((.....(((((.......)))))....))))))))))))).(((((((.............))))))).... ( -21.22, z-score = -1.93, R) >consensus UGUUUUAGU__CCAGAUUAAUGUUCAUAAUCAAUAUGGUUGAAAUGUUAAAUUGAAUAUUAUCUGACAGGGCUUAGAAAAUUAGUUGGUCCUGCUCG ............(((((.((((((((.....(((((.......)))))....))))))))))))).(((((((.............))))))).... (-18.90 = -19.02 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:59 2011