| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,973,689 – 15,973,782 |
| Length | 93 |
| Max. P | 0.905043 |
| Location | 15,973,689 – 15,973,782 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.69 |
| Shannon entropy | 0.36724 |
| G+C content | 0.45227 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.18 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15973689 93 - 23011544 UGUACACACAUGGGCAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA---------- ............((((....-))))..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...---------- ( -30.30, z-score = -2.66, R) >droSim1.chr2L 15686820 87 - 22036055 ------CACAUGGGCAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA---------- ------......((((....-))))..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...---------- ( -30.30, z-score = -3.22, R) >droSec1.super_5 4706914 87 - 5866729 ------CACAUGGGCAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA---------- ------......((((....-))))..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...---------- ( -30.30, z-score = -3.22, R) >droYak2.chr2L 2963248 87 + 22324452 ------CACAUGGGCAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACUUUGUGGCCAAA---------- ------......((((....-))))..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...---------- ( -30.30, z-score = -3.42, R) >droEre2.scaffold_4929 7671257 87 - 26641161 ------CACACGGGCAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACUUUGUGGCCAAA---------- ------......((((....-))))..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...---------- ( -30.30, z-score = -3.52, R) >droAna3.scaffold_12916 15780049 87 + 16180835 ------CACACGGACAUUCC-UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUAGUGGCCAAA---------- ------.....((.....))-.(((....((..(((..(((((((......))))...)))..)))..)))))((((((......))))))...---------- ( -26.40, z-score = -2.80, R) >dp4.chr4_group4 4805471 87 - 6586962 ------CACACAGACAGGCU-CGUCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGUUGAA---------- ------......(((.....-.)))..((((..(((..(((((((......))))...)))..)))..))))((((((((....))))))))..---------- ( -24.70, z-score = -1.98, R) >droPer1.super_49 243480 87 + 569410 ------CACACAGACAGGCU-CGUCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGUUAAA---------- ------..(((((...(((.-(((....(((..(((..(((((((......))))...)))..)))..)))))))))......)))))......---------- ( -23.30, z-score = -2.08, R) >droVir3.scaffold_12723 3812607 92 + 5802038 ------CAUGUAUACA------GCCAAUCGUUUCCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAACUGGCCCCACUGUUACCCAA ------...(((.(((------(......((.(((.((((.((((........)))).)))).)))..))((.(((((.......))))))).))))))).... ( -23.60, z-score = -1.86, R) >droGri2.scaffold_15252 8142008 92 + 17193109 CACGCACACAUAAUUAUACUCUGGCAAUCAUUCCCCAUUUCGUGUUAAAUAACACAUUGAAUCGGAUUGCGGCGCCCAUAACAACUUGCCCA------------ .......................((((((......((....(((((....)))))..)).....))))))((((............))))..------------ ( -13.70, z-score = 0.17, R) >droMoj3.scaffold_6500 9340750 71 - 32352404 ------CACAUAUACA------GCCAAUCGCUUCCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACA--------------------- ------..........------(((..((((.(((.((((.((((........)))).)))).)))..)))).))).......--------------------- ( -16.30, z-score = -1.83, R) >consensus ______CACAUGGACAUUCC_UGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA__________ ......................(((..((((...((..(((((((......))))...)))..))...)))).)))............................ (-13.54 = -13.18 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:58 2011