Locus 2052

Sequence ID dm3.chr2L
Location 15,894,536 – 15,894,628
Length 92
Max. P 0.517322
window2820

overview

Window 0

Location 15,894,536 – 15,894,628
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 92.61
Shannon entropy 0.13097
G+C content 0.46957
Mean single sequence MFE -16.32
Consensus MFE -13.30
Energy contribution -13.18
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.73
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.05
SVM RNA-class probability 0.517322
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 15894536 92 - 23011544
AACCGCCCUUCCAGGCCACUUCAUACCAUUUUAGCCCACUGACUAUCCCAACUCUACGGGAGUCUGAAUGCUGCAAUGUUUCACCAAUAAUU
....(((......)))..........((((.((((.....(((..((((........))))))).....)))).)))).............. ( -17.60, z-score =  -1.74, R)
>droSim1.chr2L 15604611 92 - 22036055
AACCGCCCUUCCAGCCCACUUCAUACCAUUUUAGCCCACCGACUAUCCCAACUCCACGGGAGUCUGAAUGCUGCAAUGUUUCACCAAUAAUU
..........................((((.((((...(.(((..((((........))))))).)...)))).)))).............. ( -13.60, z-score =  -1.25, R)
>droSec1.super_5 4627432 92 - 5866729
AACCGCCCUUCCAGCCUACUUCAUACCAUUUUAGCCCACCGACUAUCCCAACUCCACGGGAGUCUGAAUGCUGCAAUGUUUCACCAAUAAUU
..........................((((.((((...(.(((..((((........))))))).)...)))).)))).............. ( -13.60, z-score =  -1.24, R)
>droYak2.chr2L 2877757 92 + 22324452
AACCGCCCUUUCAGCACACUUCAUAACAUUUUAGCACACUGACUAUCCCAACUCCACGGGAGUCUGAAUGCUGCAAUGUUUCACCAAUAAUU
....((.......)).........((((((.(((((..(.(((..((((........))))))).)..))))).))))))............ ( -18.30, z-score =  -2.70, R)
>droEre2.scaffold_4929 7592498 92 - 26641161
AACCGCCCUUUUAGCCCACUUCAUACCAUUUCAGCCCACUGAGCAUUCCAGCUCCACGGGAGUCUGAAUGCUGCAAUGUUUCCCAAAUAAUU
....((........................((((....))))((((((..(((((...)))))..)))))).)).................. ( -18.50, z-score =  -1.75, R)
>consensus
AACCGCCCUUCCAGCCCACUUCAUACCAUUUUAGCCCACUGACUAUCCCAACUCCACGGGAGUCUGAAUGCUGCAAUGUUUCACCAAUAAUU
..........................((((.((((.....(((..((((........))))))).....)))).)))).............. (-13.30 = -13.18 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:48 2011