| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,880,578 – 15,880,670 |
| Length | 92 |
| Max. P | 0.691606 |
| Location | 15,880,578 – 15,880,670 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 91.85 |
| Shannon entropy | 0.13227 |
| G+C content | 0.55130 |
| Mean single sequence MFE | -32.75 |
| Consensus MFE | -25.08 |
| Energy contribution | -27.57 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15880578 92 - 23011544 CGCAAACCAGAUCCGAAUAUGUAUGCGUAUGCGCUAUGCGUUCGAGGGUCCUGGUUCUGGUCCUGCUGGGCCCGAAAGUGUGCCUGCAAACU .(((.(((((((((....(((((((((....))).))))))....)))).)))))((.(((((....))))).)).........)))..... ( -34.10, z-score = -2.21, R) >droSim1.chr2L 15589493 92 - 22036055 CGCAAACCAGAUCCGAAUAUGUAUGCGUAUGCGCUAUGCGUUCGAGGGUCCUGGUUCUGGUCCUGCUGGGCCCGAAAGUGUGCCUGCAAACU .(((.(((((((((....(((((((((....))).))))))....)))).)))))((.(((((....))))).)).........)))..... ( -34.10, z-score = -2.21, R) >droSec1.super_5 4611905 92 - 5866729 CGCAAACCAGAUCCGAAUAUGUAUGCGUAUGCGCUAUGCGUUCGAGGGUCCUGGUUCUGGUCCUGCUGGGCCCGAAAGUGUGCCUGCAAACU .(((.(((((((((....(((((((((....))).))))))....)))).)))))((.(((((....))))).)).........)))..... ( -34.10, z-score = -2.21, R) >droYak2.chr2L 2860085 83 + 22324452 CGCAAACCAGAUCCGAAUAUGUACGCGUAUGCGCUAUGCGUUCAAGAGUCCUGGAUCUGGUCCUGCU---------AGUGCGCCUGCAAGCU .(((.(((((((((((((..(((.(((....))))))..)))).((....)))))))))))..))).---------..(((....))).... ( -28.70, z-score = -1.91, R) >consensus CGCAAACCAGAUCCGAAUAUGUAUGCGUAUGCGCUAUGCGUUCGAGGGUCCUGGUUCUGGUCCUGCUGGGCCCGAAAGUGUGCCUGCAAACU .(((..((((((((....(((((((((....))).))))))....)))).))))(((.(((((....))))).)))........)))..... (-25.08 = -27.57 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:47 2011