| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,489,716 – 1,489,814 |
| Length | 98 |
| Max. P | 0.689555 |
| Location | 1,489,716 – 1,489,814 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.81 |
| Shannon entropy | 0.41199 |
| G+C content | 0.44086 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -10.17 |
| Energy contribution | -10.64 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1489716 98 - 23011544 UCCCCUUCAAUCCGUCAGUUCAAUGACGAAACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGCGUUGUGC-------GUCCAUUGUUCCCGAACCG----- .....(((....(((((......))))).......((((((((((((((.((......((((....)))))))))).))-------))..))))))...)))...----- ( -18.60, z-score = -2.13, R) >droSim1.chr2L 1464812 94 - 22036055 ----CUUCAAUCCGUCAAUUCAAUGACGAAACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGCGUUGUGC-------GUCCAUUGUUCCCGAACCG----- ----.(((....(((((......))))).......((((((((((((((.((......((((....)))))))))).))-------))..))))))...)))...----- ( -17.80, z-score = -1.67, R) >droSec1.super_14 1436939 94 - 2068291 ----CUUCAAUCCAUCAAUUCAAUGACGAAACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGCGUUGUGC-------GUCCAUUGUUCCCGAACCG----- ----..........((....((((((((......)...............(((((..(((((....)))))..))).))-------)).))))).....))....----- ( -13.60, z-score = -0.39, R) >droYak2.chr2L 1466330 105 - 22324452 UCCCCUUCAAUCCGUCAAUUCAAUGACGAGACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGUGUUGUGCGUUGAGCGUCCAUUGUUCCCGAACCG----- .....(((..(((((((......))))).))....((((((((((((((.((((((((((((....)))))))))).)))))).))))..))))))...)))...----- ( -30.40, z-score = -5.00, R) >droEre2.scaffold_4929 1538166 98 - 26641161 UCCCCUUCAAUCCGUCAAUUCAAUGGCGAAACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGCGUUGUGC-------GUCCAUUGUUCCCGAACCG----- .....(((....(((((......))))).......((((((((((((((.((......((((....)))))))))).))-------))..))))))...)))...----- ( -17.20, z-score = -1.15, R) >droAna3.scaffold_12916 4953915 85 - 16180835 ----CUUCAAUCCGUCAAUUCAAUGACGAAUCUCCAAUAAUAUGCAAACUGCCAAUAUUGCGUAUACGUAGCGUUGUAC-------UUCCUUUGUU-------------- ----........(((((......)))))...............(((((....(((..(((((....)))))..)))...-------....))))).-------------- ( -12.50, z-score = -1.04, R) >dp4.chr4_group3 1644778 87 + 11692001 --CUCUUCAAUCCGUCAAUUCAAUGACGAAACUCCCAUAAUAUGCCAAAUGCCAAUAUUGCGUAUACGUAACGUUGUGC-------GUCCAGUGUU-------------- --..........(((((......)))))..........(((((.....(((((((..(((((....)))))..))).))-------))...)))))-------------- ( -17.90, z-score = -2.43, R) >droPer1.super_8 2713783 87 + 3966273 --CUCUUCAAUCCGUCAAUUCAAUGACGAAACUCCCAUAAUAUGCCAAAUGCCAAUAUUGCGUAUACGUAACGUUGUGC-------GUCCAGUGUU-------------- --..........(((((......)))))..........(((((.....(((((((..(((((....)))))..))).))-------))...)))))-------------- ( -17.90, z-score = -2.43, R) >droGri2.scaffold_15252 6575557 101 + 17193109 ---UGCUCGAUUCUCAAAAUGUCGGCUGCCAACUCAAUAAUAUGCCAG-UGCCAAUAUUGCGUAUACGCGCCAUAGGAC-----CCGGUCACUGUUCCAACAAUUGCUGU ---.((.((((.........))))))...................(((-((((..(((.((((....)))).)))(...-----.))).)))))................ ( -18.50, z-score = 1.23, R) >consensus __C_CUUCAAUCCGUCAAUUCAAUGACGAAACUCCAAUAAUAUGCCAACUGCCAAUAUUGCGUAUACGUAGCGUUGUGC_______GUCCAUUGUUCCCGAACCG_____ ............(((((......)))))......................((((((.(((((....))))).)))).))............................... (-10.17 = -10.64 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:37 2011