| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,875,769 – 15,875,862 |
| Length | 93 |
| Max. P | 0.979411 |
| Location | 15,875,769 – 15,875,862 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.54446 |
| G+C content | 0.44583 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.81 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15875769 93 + 23011544 UCCCUUUGUGGGAGCCAGGGAUAC------CCAGAACACAGGCUC--------ACCCACAACAGUUG-AACACACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .....(((((((((((.(((...)------)).(....).)))).--------.)))))))..((((-((........(((((((.....)))))))...))))))..------- ( -26.20, z-score = -3.44, R) >droSim1.chr2L 15584657 93 + 22036055 UCCCUUUGUGGGAGCCAGGGAUAC------CCAGAACACAGGCUC--------GCCCACAACAGUUG-AACACACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .....(((((((((((.(((...)------)).(....).)))).--------.)))))))..((((-((........(((((((.....)))))))...))))))..------- ( -26.20, z-score = -3.18, R) >droSec1.super_5 4607061 93 + 5866729 UCCCUUUGUGGGAGCCAGGGAUAC------CCAGAACACAGGCUC--------GCCCACAACAGUUG-AACACACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .....(((((((((((.(((...)------)).(....).)))).--------.)))))))..((((-((........(((((((.....)))))))...))))))..------- ( -26.20, z-score = -3.18, R) >droYak2.chr2L 2853685 93 - 22324452 UCCCUUUGUGGGAGCCAGGGAUUC------CCGGAACACAGGCUC--------GCCCACAACAGUUG-AACACACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .....(((((((((((.(((...)------))(.....).)))).--------.)))))))..((((-((........(((((((.....)))))))...))))))..------- ( -27.60, z-score = -3.01, R) >droEre2.scaffold_4929 7574187 92 + 26641161 UCCCUUUGUGGGAGCCUGGGACAC------CCAGAACUCAG-CCA--------GCCCACAACAGUUG-AACCCACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .....(((((((.(((((((...)------))))......)-)..--------.)))))))..((((-((........(((((((.....)))))))...))))))..------- ( -25.70, z-score = -2.97, R) >droAna3.scaffold_12916 15675832 99 - 16180835 UCCCUUUGUGGGAUUCGGGGAUGC------CAGAAACCCACUCUC---------GCCACAACAGUUGCGAAAAACUCCUUUGCAUAAUUCAUG-AAAAAACAAAAAGUAGAAACC ...(((((((((.(((.((....)------).))).)))))..((---------((.((....)).)))).......................-.........))))........ ( -19.30, z-score = -0.25, R) >dp4.chr4_group4 4693938 107 + 6586962 UCCCUUUGUGGGAGACAGGGAUACGAUACUCCGGAACACACUCUCUCACGCGCACACCCAACAGUUG-AACAAACUCUUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .......((((((((...(((........)))(.....)..))))))))..............((((-((.......((((((((.....))))))))..))))))..------- ( -23.10, z-score = -2.22, R) >droPer1.super_49 128933 107 - 569410 UCCCUUUGUGGGAGACAGGGAUACGAUACUCCGGAACACACUCUCUCACGCGCACACCCAACAGUUG-AACAAACUCUUUUGCAUAAUUCAUGCAAAAAAUUCAACAC------- .......((((((((...(((........)))(.....)..))))))))..............((((-((.......((((((((.....))))))))..))))))..------- ( -23.10, z-score = -2.22, R) >droWil1.scaffold_180772 6349406 91 + 8906247 UCCCUUUGUGGGGAAAGAGUAUAA--------GGAGCAGAAAACU----------UUGUACUGGAAC-ACAAAACUCUUUUGCAUAAUUCAUGCAAAAAAUUCCAAACUC----- (((((....)))))...(((((((--------((.........))----------)))))))((((.-.........((((((((.....))))))))..))))......----- ( -20.80, z-score = -1.80, R) >droVir3.scaffold_12723 3670944 75 - 5802038 UCCCUUUAUGGGA-----------------CCGCAACGCA---------------CCGCCACAGUUC-AACAAACUCUUUUGCAUAAUUCAUGCAAAAACUCCAUCAC------- ((((.....))))-----------------..((......---------------..))........-.........((((((((.....))))))))..........------- ( -12.30, z-score = -2.10, R) >droGri2.scaffold_15252 8037785 72 - 17193109 UCCCUUUAUGGGA-----------------CCACAACGAA---------------CCGC-ACAGUUC-AACAAACUCUUUUGCAUAAUUCA--AAAAAAAUUCAACAC------- ((((.....))))-----------------.......(((---------------(...-...))))-.......................--...............------- ( -8.50, z-score = -1.53, R) >consensus UCCCUUUGUGGGAGCCAGGGAUAC______CCGGAACACAGGCUC_________CCCACAACAGUUG_AACAAACUCCUUUGCAUAAUUCAUGCAAAAAAUUCAACAC_______ ((((.....)))).................................................................(((((((.....))))))).................. ( -9.53 = -9.81 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:46 2011