| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,848,549 – 15,848,628 |
| Length | 79 |
| Max. P | 0.523284 |
| Location | 15,848,549 – 15,848,628 |
|---|---|
| Length | 79 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 66.22 |
| Shannon entropy | 0.68532 |
| G+C content | 0.36235 |
| Mean single sequence MFE | -15.31 |
| Consensus MFE | -6.88 |
| Energy contribution | -7.60 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15848549 79 + 23011544 UUAAUUGGAGAAGCGCUAUUCAUCGCGUUUCCUUUCUGAAACUAUUAAAAGGCUUUGGA-ACAAGUUCGGAAAAUAUAUU .........(((((((........))))))).((((((((....(((((....))))).-.....))))))))....... ( -14.80, z-score = -0.69, R) >droSim1.chr2L 15556462 79 + 22036055 UUAAUUGGAGAAGCGCUAUUCAUCGCGUCUCCUUUCUGAAACUAUUAAAAGGCUUUGGA-ACAAGUUCGGAAAAUAUAUU ......(((((.(((........))).)))))((((((((....(((((....))))).-.....))))))))....... ( -16.80, z-score = -1.37, R) >droSec1.super_5 4578619 79 + 5866729 UUAAUUGGAGAAGCGCUAUUCAUCGCGUCUCCUUUCUGAAACUAUUAAAAGGCUUUGGU-AGAAGUUCGAAAAAUAUAUU ......(((((.(((........))).)))))((((.(((.((((((((....))))))-))...)))))))........ ( -18.20, z-score = -1.82, R) >droYak2.chr2L 2822583 65 - 22324452 UUAAUUGGAGAAGCGCUAUUCAUCGCUUUUCCGUUCUGAAAAGAUUAAAA---------------UUCGGAAAAUAUUUU ......(((((((((........))))))))).(((((((..........---------------)))))))........ ( -17.40, z-score = -2.90, R) >droEre2.scaffold_4929 7540573 79 + 26641161 UUAAUUGGAGAAACGCUAUUCAUCGCUUUACCUUUCUGUAGCUAUUAAAAGGCUUUGGA-GCAAGUUCGGAAAAUAUAUU ....((((((((......)))...(((((((((((..((....))..)))))...))))-))...))))).......... ( -9.90, z-score = 1.33, R) >droAna3.scaffold_12916 15651525 68 - 16180835 UUAAUUGGAGCCA--------GCGGUGGUUAUUUUUUUUAACUAGCCAAGGGCACUCUC----CUAACUAAGAAUCUUUU ......((((((.--------..((((((((.......)))))).))...)))....))----)................ ( -13.00, z-score = 0.08, R) >dp4.chr4_group4 4660761 75 + 6586962 GAAAUUGCAGCCGCGGC-----UCGAGCUUCCUUUGAGUAAUUGGUUCAGGGCUUUGGUUAUGGGUUCCAUUGAUACAUU (((.((..(((((.(((-----(((((((..............))))).))))).)))))..)).)))............ ( -17.04, z-score = 0.64, R) >consensus UUAAUUGGAGAAGCGCUAUUCAUCGCGUUUCCUUUCUGAAACUAUUAAAAGGCUUUGGA_ACAAGUUCGGAAAAUAUAUU ......(((((((((........)))))))))................................................ ( -6.88 = -7.60 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:42 2011