| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,845,302 – 15,845,356 |
| Length | 54 |
| Max. P | 0.858172 |
| Location | 15,845,302 – 15,845,356 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 97.41 |
| Shannon entropy | 0.04472 |
| G+C content | 0.49630 |
| Mean single sequence MFE | -12.66 |
| Consensus MFE | -12.82 |
| Energy contribution | -12.66 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.22 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15845302 54 - 23011544 GAGAGCGACAAUAUCGAGCAGUUAUAUUCGAAACGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). ( -12.40, z-score = -1.51, R) >droEre2.scaffold_4929 7537384 54 - 26641161 GGGAGCGACGAUAUCGAGCAGUUAUAUUCGAAACGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). ( -12.60, z-score = -0.73, R) >droYak2.chr2L 2819318 54 + 22324452 GAGAGCGACGAUAUCGAGCAGUUAUAUUCGAAACGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). ( -13.50, z-score = -1.32, R) >droSec1.super_5 4575314 54 - 5866729 GAGAGCGACAAUAUCGAGCAGUUAUAUUCGAAACGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). ( -12.40, z-score = -1.51, R) >droSim1.chr2L 15553160 54 - 22036055 GAGAGCGACAAUAUCGAGCAGUUAUAUUCGAAGCGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). ( -12.40, z-score = -1.02, R) >consensus GAGAGCGACAAUAUCGAGCAGUUAUAUUCGAAACGGAGUCAAGGCAACGCCUCA (((.(((((....(((((........)))))......)))..(....)))))). (-12.82 = -12.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:42 2011