| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,827,004 – 15,827,102 |
| Length | 98 |
| Max. P | 0.510463 |
| Location | 15,827,004 – 15,827,102 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 52.07 |
| Shannon entropy | 0.66934 |
| G+C content | 0.42785 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -7.02 |
| Energy contribution | -6.03 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15827004 98 - 23011544 GUCGCGCAUGCUAAUUAUGCUGACUCUGCAC-UUCUGGUCUG-AAUAGCAUUCUUGUGUGGUCAGAUUGCUGAGCACUCAAGAUAUGCCUGGGAACUGAA ((((.(((((.....))))))))).......-.((...(((.-(...(((((((((.(((.((((....)))).))).))))).)))).).)))...)). ( -30.30, z-score = -1.42, R) >droAna3.scaffold_13082 545344 79 - 3919855 GUCGCGCAUGCUAAAUAUGCCGACUAAGCAUAUAGUGAUUCACGCUGGAAUUCUUGUGUGAUCAAUUUGCUACACAUUU--------------------- ((((.(((((.....)))))))))..((((.....((((.(((((.((....)).)))))))))...))))........--------------------- ( -24.90, z-score = -3.12, R) >droWil1.scaffold_181143 31997 88 - 1323777 GUUGCACGUGUUAGAUAUGCCGACUCAGCACUGUGCAGUAUGCCAU-GCAUUCAUGU-UAAUGAGAAUGUGUGGUACUUGAAUUUGUAUA---------- .(((((((((((.((.........))))))).))))))..((((((-((((((....-......))))))))))))..............---------- ( -25.60, z-score = -1.00, R) >consensus GUCGCGCAUGCUAAAUAUGCCGACUCAGCAC_UUGUGGUAUGCAAU_GCAUUCUUGUGUGAUCAGAUUGCUAAGCACUU_A__U________________ .((((((((((((....(((.......)))....(((...)))..)))))....)))))))....................................... ( -7.02 = -6.03 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:41 2011