| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,816,152 – 15,816,261 |
| Length | 109 |
| Max. P | 0.691289 |
| Location | 15,816,152 – 15,816,261 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.61 |
| Shannon entropy | 0.56398 |
| G+C content | 0.37100 |
| Mean single sequence MFE | -13.47 |
| Consensus MFE | -7.48 |
| Energy contribution | -6.96 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.91 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15816152 109 + 23011544 UUUCAACCGCCUCCAUUUU-AUUUUCCUUAUUUAUACUUAUUUUUUU-AUUCUUUUUCGGCUGCCAAAGAGAUAACAGCUGCACUCAAUUUGCAUAACACACGCUUUGGCU ........(((........-...........................-..........))).(((((((..........((((.......)))).........))))))). ( -13.99, z-score = -0.83, R) >droSim1.chr2L 15525639 110 + 22036055 UUUCACCCGCCUCCAUUUU-AUUUUCCUUAUUUAUACUUAUUUUUUUUAUUCUUUUUCGGCUGCCAAAGAGAUAACAGCUGCACUCAAUUUGCAUAACACACGCUUUGGCU ........(((........-......................................))).(((((((..........((((.......)))).........))))))). ( -13.96, z-score = -1.01, R) >droSec1.super_3 2024932 109 + 7220098 UUUCACCCGCCUCCAUUUU-AUUUUCCUUAUUUAUACCUUUUUUUUU-AUUCUUUUUCGGCUGCCAAAGAGAUAACAGCUGCACUCAAUUUGCAUAACACACGCUUUGGCU ........(((........-...........................-..........))).(((((((..........((((.......)))).........))))))). ( -13.99, z-score = -0.96, R) >droAna3.scaffold_12916 15627992 94 - 16180835 UUUCACCCGUAUUCUUUUUUAUUUUCCUUAUUU---UUUAUUUG-------------CGGUUUCGCCUCUGAUAACAGCUGCAGUCAAUUUGCAUAACAUACGCAGGACA- .....(((((((.....................---.(((((.(-------------.((.....)).).)))))....(((((.....)))))....)))))..))...- ( -11.90, z-score = -0.10, R) >droPer1.super_116 84328 100 + 110639 -UGCUCCCGUCUCCUUUUUUAUUUUCUUUAUUUAUUUUCAUUUUUUG----------CGGCUUCUCUUCUGAUAACAGCUGCACUCAAUUUGCAUAACACACGCGCUGGAA -...(((.((...................................((----------(((((((......))....)))))))........((.........)))).))). ( -12.80, z-score = -0.40, R) >droWil1.scaffold_180772 6261627 99 + 8906247 ------CCGCUUUCUCCCUUCUUUCUAUCACUCUCUUUCUUUCUCUU------UGUUGUAUCUUUUUCGUGAUAACAGCUGCACUCAAUUUGCAUAACACACGCGUGAGUG ------......................(((((.(............------.((((((((........))).)))))((((.......))))..........).))))) ( -14.20, z-score = -2.12, R) >consensus UUUCACCCGCCUCCAUUUU_AUUUUCCUUAUUUAUACUUAUUUUUUU______UUUUCGGCUGCCAAAGAGAUAACAGCUGCACUCAAUUUGCAUAACACACGCUUUGGCU ..............................................................(((((((..........((((.......)))).........))))))). ( -7.48 = -6.96 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:38 2011