| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,806,388 – 15,806,486 |
| Length | 98 |
| Max. P | 0.938637 |
| Location | 15,806,388 – 15,806,486 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.03 |
| Shannon entropy | 0.53494 |
| G+C content | 0.46808 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -11.30 |
| Energy contribution | -10.29 |
| Covariance contribution | -1.01 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15806388 98 - 23011544 AAGAUGGGAAAGCUAUACCC-AAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCU-GCCGCCUUCUUCUUGCCCAUUCUAUCCCAUUUUU---------- (((((((((...........-....((........))(((((...((..........((((....-))))..........)).)))))..))))))))).---------- ( -18.05, z-score = -0.75, R) >droPer1.super_116 71513 86 - 110639 GGAUUGAAAGAGGGGCAUCC-CAAGCCCGAGUCGACGGAAUGUUCCGUCGUUCGUCUUGGCUU---GCU-UCUUUUUCCUGACUGCUUUCU------------------- .....((((((((((((..(-((((..((((.(((((((....))))))))))).)))))..)---)))-)))))))).............------------------- ( -37.90, z-score = -4.28, R) >dp4.chr4_group4 4611364 86 - 6586962 GGAUUGAAAGAGGGGCAUCC-CAAGCCCGAGUCGACGGAAUGUUCCGUCGUUCGUCUUGGCUU---GCU-UCUUUUUCCUGACUGCUUUCU------------------- .....((((((((((((..(-((((..((((.(((((((....))))))))))).)))))..)---)))-)))))))).............------------------- ( -37.90, z-score = -4.28, R) >droEre2.scaffold_4929 7502474 100 - 26641161 AAGAUGGGAAAGCUAAACCCAAAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCUAGCCGCCAUCUUCCUCCCCAUUCUACCCCAUUUUU---------- ((((((((..(((....((.................))...)))..))))))))...((((........))))...........................---------- ( -17.63, z-score = -0.96, R) >droYak2.chr2L 2775495 108 + 22324452 AGGAUGGGAAAGCUAUACCC-AAAACUCAACUCCAAGGAAUGUUUGCCCAUCUUUUCUGGCUUCA-GCCGCCUCCUUCUGCCCCAUUUUUUCCCAUUCUACACUAUUUUC ((((((((((((........-.............(((((.((......)))))))...(((....-)))..................))))))))))))........... ( -20.70, z-score = -0.84, R) >droSec1.super_3 2014895 98 - 7220098 AAGAUGGGAAAGCUAUACCC-AAAACUUAACUAAAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCU-GCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUU---------- ((((((((..(((.((.((.-...............)).)))))..))))))))....(((....-)))...............................---------- ( -17.99, z-score = -1.20, R) >droSim1.chr2L 15515433 98 - 22036055 AAGAUGGGAAAGCUAUACCC-AAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCU-GCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUU---------- ((((((((..(((.((.((.-...............)).)))))..))))))))....(((....-)))...............................---------- ( -17.99, z-score = -1.17, R) >consensus AAGAUGGGAAAGCUAUACCC_AAAACUCAACUCCAAGGAAUGUUCGCCCAUCUUUUCUGGCUUCU_GCCGCCUUCUUCUUCCCCAUUCUAUCCCAUUUUU__________ .(((((((..(((....((.................))...)))..))))))).....(((.....)))......................................... (-11.30 = -10.29 + -1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:38 2011