| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,805,078 – 15,805,181 |
| Length | 103 |
| Max. P | 0.773814 |
| Location | 15,805,078 – 15,805,181 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Shannon entropy | 0.42557 |
| G+C content | 0.37653 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -12.58 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15805078 103 - 23011544 AGCACACCCACACGCAGAUAAAGAAU---UAAGUAUCUGUGUGAACG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACAAGAACCAGCAUGA ..........((((((((((......---....))))))))))....----------......((.(((((.-...(((((((.....)))))))..(....).....))))).)). ( -24.20, z-score = -2.85, R) >droSim1.chr2L 15514102 103 - 22036055 AGCACACCCACACGCAGAUAAAGAAU---UAAGUAUCUGUGUGAACG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACAAGAACCAGCAUGA ..........((((((((((......---....))))))))))....----------......((.(((((.-...(((((((.....)))))))..(....).....))))).)). ( -24.20, z-score = -2.85, R) >droSec1.super_3 2013559 103 - 7220098 AGCACACCCACACGCAGAUAAAGAAU---UAAGUAUCUGUGUGAACG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACAAGAACCAGCAUGA ..........((((((((((......---....))))))))))....----------......((.(((((.-...(((((((.....)))))))..(....).....))))).)). ( -24.20, z-score = -2.85, R) >droYak2.chr2L 2774132 102 + 22324452 AGCAC-CCCACACGCAGAUAAAGAAU---UAAGUAUCUGUGUGAACG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACAAGAACCAGCAUGA .....-....((((((((((......---....))))))))))....----------......((.(((((.-...(((((((.....)))))))..(....).....))))).)). ( -24.20, z-score = -3.09, R) >droAna3.scaffold_12916 15617904 100 + 16180835 ---AGGCCCUCACACAGAUAAAGAAU---UAAGUAUCCGUGCGAAUG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA ---..(((.((.(((.((((......---....)))).))).)).((----------(....)))....)))-...(((((((.....))))))).......((.((....)).)). ( -18.90, z-score = -0.72, R) >dp4.chr4_group4 4609962 101 - 6586962 --UGCACCCUCACACAGAUAUAGAAU---UAAGUAUCUAUGUGCAUG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA --((((....((((.((((((.....---...)))))).))))..))----------))....((.(((((.-...(((((((.....)))))))..(......)...))))).)). ( -21.90, z-score = -1.47, R) >droPer1.super_116 70101 101 - 110639 --UGCACCCUCACACAGAUAUAGAAU---UAAGUAUCUAUGUGCAUG----------UAAAGACAAGUUGGC-AAAGUUAAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA --((((....((((.((((((.....---...)))))).))))..))----------))....((.(((((.-...(((((((.....)))))))..(......)...))))).)). ( -21.90, z-score = -1.47, R) >droWil1.scaffold_180772 6245684 114 - 8906247 --CACACUAAUACUUAGAUAGUAAGUGUGUAUGUAUGUGUGUGUGUGUUAGUGUAUCUAAAGACAAGUUGGC-AAAGUUGAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA --((((((..((((.....))))))))))....(((((..((((((((((.(((..((.......))...))-)..(((((((.....)))))))....))))))))))..))))). ( -33.90, z-score = -2.23, R) >droMoj3.scaffold_6500 9102464 102 - 32352404 --CAAGCAGGCAUACGGCUGCAGCUU---UAUGUAUAUGUAUCUGUG----------UAAAGGCGAGUUGGCAAAAGUUGAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA --...((((.(....).)))).(((.---..(((.....(((((.((----------(.(((((((((..((....))..)...)))))))).))))))))....)))..))).... ( -26.60, z-score = -0.18, R) >droVir3.scaffold_12723 3547440 89 + 5802038 ------------CACGUACACGAGUU------ACAUUUGCAGCUACA----------UAUAUAUAUGCUGGCAAAAGUAGAACUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA ------------..((....)).(((------(..((((((((....----------.........))))(((((((.....))))))).....)))).))))..((....)).... ( -16.32, z-score = -0.57, R) >consensus __CACACCCACACACAGAUAAAGAAU___UAAGUAUCUGUGUGAACG__________UAAAGACAAGUUGGC_AAAGUUAAAGUUUUGCUUUAACAAGAUAACACGCACCAGCAUGA ..........((((((.(((.............))).))))))....................((.(((((.....(((((((.....)))))))..(....).....))))).)). (-12.58 = -12.92 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:37 2011