| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,792,010 – 15,792,108 |
| Length | 98 |
| Max. P | 0.876872 |
| Location | 15,792,010 – 15,792,108 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Shannon entropy | 0.39063 |
| G+C content | 0.48262 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -15.94 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15792010 98 + 23011544 -----CCCACUCCCCAGUACCAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGCCAAUGCAGCUGACCGUC -----..........((((..((((((((....)))))))))))).....((.(((((((((.((...((((........))))))))))))))).))..... ( -21.40, z-score = -1.16, R) >droSim1.chr2L 15500858 98 + 22036055 -----CCCACUCCCCAGUUCCAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGCCAAUGCAGCUGACCGUC -----........(((......)))..........(((((..(......)..)(((((((((.((...((((........))))))))))))))).))))... ( -21.40, z-score = -1.34, R) >droSec1.super_3 2000498 98 + 7220098 -----CCCACUCCCCAGUUCCAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGCCAAUGCAGCUGACCGUC -----........(((......)))..........(((((..(......)..)(((((((((.((...((((........))))))))))))))).))))... ( -21.40, z-score = -1.34, R) >droYak2.chr2L 2756076 98 - 22324452 -----CCCACUCCCCAGUUCCAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUCCAAUGGCCAAUGCAGCUGACCGUC -----........(((......)))..........(((((..(......)..)(((((((((.((...((((........))))))))))))))).))))... ( -21.40, z-score = -1.34, R) >droEre2.scaffold_4929 7488063 98 + 26641161 -----CCCGCUCCCCAGUUCCAUUGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGCCAAUGCAGCUGACCGUC -----..........(((......)))........(((((..(......)..)(((((((((.((...((((........))))))))))))))).))))... ( -20.10, z-score = -1.28, R) >droAna3.scaffold_12916 15604319 89 - 16180835 ---------CCUCCCA---CCA--GCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGUCAUUGCAGCUGACCGUC ---------......(---(((--((......))))))............((.((((((.(((....(((((........)))))))).)))))).))..... ( -20.10, z-score = -2.13, R) >dp4.chr4_group4 4593175 103 + 6586962 CUUGGUCGCCCUUCUCCCUAGAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCGAUGGCCAAUGCAGCUGGCCAAC .((((((.............(((((((((....)))))))))...........(((((((((.((..((...........))..))))))))))).)))))). ( -31.70, z-score = -2.91, R) >droPer1.super_116 53132 103 + 110639 CUUGGUCGCCCUUCUCCCUAGAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCGAUGGCCAAUGCAGCUGGCCAAC .((((((.............(((((((((....)))))))))...........(((((((((.((..((...........))..))))))))))).)))))). ( -31.70, z-score = -2.91, R) >droVir3.scaffold_12723 3522383 81 - 5802038 ---------------------GUCGCUAAAUUGCUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGGCAGCGCAGCUGGCGAC- ---------------------(((((((.......((..(((....)))..))(((((((((....((((((........))))))))))))))))))))))- ( -29.10, z-score = -3.05, R) >droMoj3.scaffold_6500 9077280 81 + 32352404 ---------------------GUCGCUAAAUUGCUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUGAAUGGGCCGCGCAGCUGGAGCA- ---------------------...((......))...............(((((((((((.(....(((((((......)))))))).))))))).))))..- ( -21.40, z-score = 0.13, R) >droGri2.scaffold_15252 7947623 81 - 17193109 ---------------------GUCGCUAAAUUGCUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGGCAGUGCAGCUGGCGAC- ---------------------(((((((.......((..(((....)))..))(((((((((....((((((........))))))))))))))))))))))- ( -24.30, z-score = -1.74, R) >consensus _____CCC_CUCCCCAGUUCCAUGGCUAAAUUGUUGGUCGUUAUUAAAUUUCCGCUGCGUUGAGUUCUCAUUUCCGUUUCAAUGGCCAAUGCAGCUGACCGUC ................................(((((..(((....)))..))(((((((((.(....)....((((....)))).))))))))).))).... (-15.94 = -15.45 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:36 2011