| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,779,374 – 15,779,456 |
| Length | 82 |
| Max. P | 0.986188 |
| Location | 15,779,374 – 15,779,456 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 60.68 |
| Shannon entropy | 0.72609 |
| G+C content | 0.36854 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -8.15 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15779374 82 - 23011544 UGACUCUGCUAACCUAAAACUAUUUCAGAACCUGCAGUGUAUUUAUCGUUAGAUAAUCACAGUAGGGAAAUAUUUCUUGACC ....................((((((....(((((.(((...(((((....))))).))).))))))))))).......... ( -15.60, z-score = -1.18, R) >droAna3.scaffold_12916 15592953 64 + 16180835 --------------AGUCCUAAGUCUGAAUUUUAACGUGCAUAAAUACUACUAUAAU---AUCUUGGAUGUAGCUCUAGGA- --------------..(((((((.(((...(((((.(((.(((........)))..)---)).)))))..))))).)))))- ( -6.70, z-score = 1.20, R) >droEre2.scaffold_4929 7479912 81 - 26641161 CGACACUGCU-CCCUGAUAGUCUUUUAAAUCCUAUAGUGUAUUUAUCGUCCGAUAAUCGCAGUAGCAAAACAUUUCUUGACC .(..(((((.-.....((((...........)))).......(((((....)))))..)))))..)................ ( -9.90, z-score = -0.03, R) >droYak2.chr2L 2743267 80 + 22324452 --GCUCUGCUUUUCAGAUACUGUUCUAAAUCCUACAGUAUAUUUAUCAUCAGAUAAUCACAGUAGGGAAAUAUUUCUUGACC --.(((((((......(((((((..........)))))))..(((((....)))))....)))))))............... ( -15.70, z-score = -1.88, R) >droSec1.super_3 1987873 64 - 7220098 --------------UGACUCCGCU----ACCCUGGAGUGUAUUUAUCGUUAGAUAAUCACAGUAGGGAAAUAUUUCUUGACC --------------..........----.(((((..(((...(((((....))))).)))..)))))............... ( -14.60, z-score = -1.19, R) >droSim1.chr2L 15488842 64 - 22036055 --------------UGACUCUGCU----ACCCUGAAGUGUAUUUAUCGUUAGAUAAUCACAGCAGGGAAAUAUUUCUUGACC --------------..........----.(((((..(((...(((((....))))).)))..)))))............... ( -16.60, z-score = -2.55, R) >consensus ______________UGACACUGUU_UAAAUCCUAAAGUGUAUUUAUCGUUAGAUAAUCACAGUAGGGAAAUAUUUCUUGACC .............................((((((.(((...(((((....))))).))).))))))............... ( -8.15 = -9.05 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:35 2011