| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,748,158 – 15,748,248 |
| Length | 90 |
| Max. P | 0.593460 |
| Location | 15,748,158 – 15,748,248 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.65 |
| Shannon entropy | 0.58044 |
| G+C content | 0.55068 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -13.96 |
| Energy contribution | -13.47 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15748158 90 - 23011544 AACGCGAUCGGCCGUA-GUGGCAACGCCGCUGC-CACUAAACUCCGACUCUCUCUUUGCGCCGUGUGGCCAGAUGAUUAUGGCCUUUUUUUU ..(((((((((...((-((((((.......)))-)))))....))))........)))))......(((((........)))))........ ( -29.40, z-score = -1.85, R) >droGri2.scaffold_15126 3421482 89 - 8399593 -ACAUUGUUCGCUGUGAAUGGCAAUUCAACAGUGUGCUAAAAGAAAACAUCGCUUAAGCGAUGUGCAGCUCGCGAGUAUCGAUUGUCACU-- -.(((.(....).)))..((((((((..((.(((.(((....(...(((((((....))))))).)))).)))..))...))))))))..-- ( -24.00, z-score = -0.46, R) >droEre2.scaffold_4929 7447965 77 - 26641161 GACGUGAUCGGCCGAG-GUGGCAGCGCCGCCAC-CGCCAAA--------CUCUCUUUGCGCCGUGUGGCCAGAUGAUUGCGUUCUUC----- ((((..((((((.(.(-(((((...)))))).)-.)))...--------.....((((.(((....))))))).)))..))))....----- ( -32.00, z-score = -1.81, R) >droYak2.chr2L 2711303 87 + 22324452 GACGCGAUCGGCCGAG-CUGGCAACGCUGCUAC-CGCUAAACAUCGA--CUCUCUUUGCGCCGUGUGGCCAGAUGAUUAUGGCCUUUUUUU- .(((((...(((..((-(.(....)))))))..-(((..........--........))).)))))(((((........))))).......- ( -22.17, z-score = 0.68, R) >droSec1.super_3 1957111 90 - 7220098 GACGCGAUCGGCCGAG-GUGGCAACGCCGCUGC-CACUAAACACCGACACUCUCUUUGCGCCGUGUGGCCAGAUGAUUAUGGCCUUUUUUUU .(((((...(((.(.(-(((....)))).).))-).........((.((.......)))).)))))(((((........)))))........ ( -28.70, z-score = -1.16, R) >droSim1.chr2L 15457172 90 - 22036055 AACGCGAUCGGCCGAG-GUGGCAACGCCGCCGC-CACUAAACUCCGACACUCUCUUUGCGCCGUGUGGCCAGAUGAUUAUGGCCUUUUUUUU .(((((...(((.(.(-(((....)))).).))-).........((.((.......)))).)))))(((((........)))))........ ( -28.60, z-score = -0.94, R) >consensus GACGCGAUCGGCCGAG_GUGGCAACGCCGCUGC_CACUAAACACCGACACUCUCUUUGCGCCGUGUGGCCAGAUGAUUAUGGCCUUUUUUU_ .........(((((...(((((......)))))...................((((((.(((....))))))).))...)))))........ (-13.96 = -13.47 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:34 2011