| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,737,787 – 15,737,886 |
| Length | 99 |
| Max. P | 0.750941 |
| Location | 15,737,787 – 15,737,886 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 88.10 |
| Shannon entropy | 0.16442 |
| G+C content | 0.52538 |
| Mean single sequence MFE | -10.28 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.45 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15737787 99 - 23011544 CAUAGUCGUCGUCGUCAGCAGCAGUAGUAUCAGUAGCAGCAGCGAUAGCCCAAUCGCUAUCCUUCCACAUCCAGAUCCAAUCCCAUCAACAUCGUUCUC .............(((.((.((.((..........)).)).))((((((......))))))............)))....................... ( -10.90, z-score = -1.05, R) >droSim1.chr2L 15446853 85 - 22036055 CAUAGUCGUCGUCGUCAGCAGCAGUAGUAUCAGUAGCAGCAGCGAUAGCCCAAUCGCAGUC---CCACAUCCAGAUCCAAUCCCAUCA----------- .............(((.((.((.............)).)).(((((......)))))....---.........)))............----------- ( -9.62, z-score = -1.65, R) >droSec1.super_3 1946808 96 - 7220098 CAUAGUCGUCGUCGUCAGCAGCAGUAGUAUCAGUAGCAGCAGCGAUAGCCCAAUCGCAGUC---CCACAUCCAGAUCCAGUCCCAUCAACAUCGUCCUC .......(.((..((..((.((.............)).)).(((((......)))))....---........................))..)).)... ( -10.32, z-score = -1.25, R) >consensus CAUAGUCGUCGUCGUCAGCAGCAGUAGUAUCAGUAGCAGCAGCGAUAGCCCAAUCGCAGUC___CCACAUCCAGAUCCAAUCCCAUCAACAUCGU_CUC .............(((.((.((.............)).)).(((((......)))))................)))....................... ( -9.45 = -9.45 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:32 2011