| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,723,060 – 15,723,163 |
| Length | 103 |
| Max. P | 0.894997 |
| Location | 15,723,060 – 15,723,163 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 56.31 |
| Shannon entropy | 0.69206 |
| G+C content | 0.43527 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -9.45 |
| Energy contribution | -10.77 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15723060 103 - 23011544 UUCAGAGAACUGCAAGGGUGGCACUUUUUUACCACUCGACUCACACCCUA-CAAUUUUGUGUGCGGGUGCUACUCGCCACGCACAUCGCGGGUACUUACAAACA------- ....(((..((((.((((((.......................)))))).-.......(((((((((((.....)))).))))))).))))...))).......------- ( -30.50, z-score = -2.19, R) >droAna3.scaffold_13230 2726657 108 - 3602488 --CAGAGAACGGCACGGGUGGCAC-UUUUCGGCAACUUAUGCAUGCUCAUAAAAAUUCGUAUAUGGAUGGCACUCUCCACUCAUCAGAAAAAUUACAUGAUGCGACACACA --..(((....(((..(((.((..-......)).)))..)))...)))........(((((((((..(((......)))..)))...............))))))...... ( -21.96, z-score = -0.43, R) >droWil1.scaffold_180762 33037 93 - 61563 --CAGAGAACGUCAAGGGUGUCAC-UUUUUGGCACCCAAAUCACACUUAU-AAAUUUUGAGUGCUUGUCGCACUCACAAACAGCAAGAAAAGAAUUA-------------- --..(((..((.(((((((((((.-....))))))))......((((((.-......)))))).))).))..)))......................-------------- ( -25.40, z-score = -3.01, R) >droMoj3.scaffold_6664 2011 99 - 6605 ---AGAGAGCUGCAAGUGUGCCAA-UUUUUGCCACCUUAAUCACACUCAAUAAAAUUUGUGUGCCGGUGCUAAUCAACACUGGUUCAGCAAAUCAUA-AAAACA------- ---.((..((((.(((.(((.((.-....)).))))))...(((((............)))))((((((........))))))..))))...))...-......------- ( -21.00, z-score = -0.57, R) >consensus __CAGAGAACGGCAAGGGUGGCAC_UUUUUGCCACCCUAAUCACACUCAA_AAAAUUUGUGUGCGGGUGCCACUCACCACUCACAAGAAAAAUAAUA__AAACA_______ ....(((........(((((((........)))))))........)))......((((((..(((((((........)))))))...)))))).................. ( -9.45 = -10.77 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:31 2011