| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,649,855 – 15,649,920 |
| Length | 65 |
| Max. P | 0.570016 |
| Location | 15,649,855 – 15,649,920 |
|---|---|
| Length | 65 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 74.96 |
| Shannon entropy | 0.50060 |
| G+C content | 0.33705 |
| Mean single sequence MFE | -6.40 |
| Consensus MFE | -2.83 |
| Energy contribution | -3.04 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15649855 65 - 23011544 AUAUAUUUUCCUCACUCUA-UUUCUUUAAUGGCAAACACUUUUUC--UGUUUUGCUAAAUCUCUGCAC ...................-.........(((((((.((......--.)))))))))........... ( -6.40, z-score = -2.55, R) >droSec1.super_3 1904568 65 - 7220098 AUAUAUUUUCCUCACUCUA-UUUCUUUAAUGGCAAACACUUUUUC--UGUUUUGCUAAAUCUCUGCAC ...................-.........(((((((.((......--.)))))))))........... ( -6.40, z-score = -2.55, R) >droYak2.chr2L 2653812 64 + 22324452 AUAUAUUUUCCUCACUCUA-UUUCUAUAAUGGCAAACACUUUUUC--UGUUUUGCU-AAUCUCUGCAC ...................-.........(((((((.((......--.))))))))-).......... ( -6.40, z-score = -2.52, R) >droEre2.scaffold_4929 7395083 65 - 26641161 AUAUAUUUUCCUCACUCUA-UUUCUUUAAUGGCAAAAACUUUUUC--UGUUUUGCUAAAUCUCUGCAC ...................-.........((((((((.(......--.)))))))))........... ( -6.40, z-score = -2.45, R) >dp4.chr4_group4 4450639 68 - 6586962 AUAUAUUUUCCCCACUCUAUUUUCUUUGAUGGCAAACAACUUUCCGUUCUUUUGCUGUAUUAAUGCAC ............................((((((((.(((.....)))..)))))))).......... ( -6.30, z-score = -1.04, R) >droPer1.super_93 72872 68 - 177177 AUAUAUUUUCCCCACUCUAUUUUCUUUGAUGGCAAACAACUUUCCGUUCUUUUGCUGUAUUAAUGCAC ............................((((((((.(((.....)))..)))))))).......... ( -6.30, z-score = -1.04, R) >anoGam1.chr3R 37572809 67 - 53272125 AACUAACCAAUGCACUCUU-CUACUUGCACUGCAACUCGCCCGUUUCUGUGUGGCUCGUUUUUUUGUC .......((.((((.....-.....)))).)).(((..(((((......)).)))..)))........ ( -6.60, z-score = 0.84, R) >consensus AUAUAUUUUCCUCACUCUA_UUUCUUUAAUGGCAAACACUUUUUC__UGUUUUGCUAAAUCUCUGCAC .............................(((((((..............)))))))........... ( -2.83 = -3.04 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:22 2011