| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,640,082 – 15,640,176 |
| Length | 94 |
| Max. P | 0.564043 |
| Location | 15,640,082 – 15,640,176 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.40979 |
| G+C content | 0.45011 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.66 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15640082 94 - 23011544 UUGCGUAUACGCCACGUUGCUCGCACCGUUGAUUAAGUCGCUCGUUCUCCGUGCUUAAUCAAUUAUGCGACGUUUGCAAAUUCACGUAGCUGCU------------ ..(((..((((.....(((((((((..((((((((((.(((.........)))))))))))))..))))).....)))).....))))..))).------------ ( -28.90, z-score = -2.23, R) >droSim1.chr2L 15392842 94 - 22036055 UUGCGUAUACGCCACGUUGCUCGCACCGUUGAUUAAGUCGCUCGUUCUCCGUGCUUAAUCAAUUAUGCGACGUUUGCAAAUUCACGUAGCUGCU------------ ..(((..((((.....(((((((((..((((((((((.(((.........)))))))))))))..))))).....)))).....))))..))).------------ ( -28.90, z-score = -2.23, R) >droSec1.super_3 1894562 94 - 7220098 UUGCGUAUACGCCACGUUGCUCGCACCGUUGAUUAAGUCGCUCGUUCUCCGUGCUUAAUCAAUUAUGCGACGUUUGCAAAUUCACGUAGCUGUU------------ ..(((..((((.....(((((((((..((((((((((.(((.........)))))))))))))..))))).....)))).....))))..))).------------ ( -26.60, z-score = -1.60, R) >droYak2.chr2L 2643948 94 + 22324452 UUGCGUAUACGCCACGUUGCACGCACCGUUGAUUAGGUCGCUCGUUUUUCGUGCUUAAUCAAUUAUGCGAUGUUGGCAAAUUCACGAAGCUUCU------------ ..(((....)((((....(((((((..((((((((((.(((.........)))))))))))))..)))).)))))))...........))....------------ ( -26.10, z-score = -0.86, R) >droEre2.scaffold_4929 7384974 94 - 26641161 UUGCGUAUACGCCACGUUGCUCGCACCGUUGAUUAAGUCGCUCGUUCGCCGUGCUUAAUCAAUUAUGCGACGUUUGCAAAUUCACGUAGCUGCU------------ ..(((..((((.....(((((((((..(((((((((((.((......))...)))))))))))..))))).....)))).....))))..))).------------ ( -28.90, z-score = -1.43, R) >droAna3.scaffold_12984 468097 94 + 754457 UUGCGUAUCCGCCAUGUUGUUCGCUUCGCUGAUUAAGUCGUUCGUUCGCCGGGUUUAAUCAAUUAUGCGACUCUUGCAAAUUCAUGUAUCUGCU------------ ..(((....)))((((((((..(..(((((((((((..(............)..))))))).....))))..)..))))...))))........------------ ( -16.60, z-score = 1.04, R) >dp4.chr4_group4 4442044 94 + 6586962 UUGCUUAUACGCCACGUUGCACGCUCCCUUGAUUAAGUCGUUCGUUUGGCGUGUUUAAUCAAUUAUGCGACGUUUGCAUAUUCGCAGAGCUCCU------------ ((((..(((.((.((((((((.......((((((((..((((.....))))...))))))))...))))))))..)).)))..)))).......------------ ( -23.10, z-score = -0.74, R) >droPer1.super_10 2278238 94 + 3432795 UUGCUUAUACGCCACGUUGCACGCUCCCUUGAUUAAGUCGUUCGUUUGGCGUGUUUAAUCAAUUAUGCGACGUUUGCAUAUUCGCAGAGCUCCU------------ ((((..(((.((.((((((((.......((((((((..((((.....))))...))))))))...))))))))..)).)))..)))).......------------ ( -23.10, z-score = -0.74, R) >droMoj3.scaffold_6500 21084946 88 - 32352404 UUGCGUAUACGCCACGUGGCACACAC--UUGAUUAAGUCAUUCGAUUUGAAUGUUUAAUCAAUUAUGCAACGCUUGCAAAUGCUGUAGUA---------------- (((((((...(((....)))......--(((((((((.(((((.....)))))))))))))).))))))).(((.((....))...))).---------------- ( -24.90, z-score = -1.94, R) >droVir3.scaffold_12963 12371159 103 - 20206255 UUGCGUAUACGCCACGUGGCACGCAC--UUGAUUAAGUCAUUCGUUUUCAAUGUUUAAUCAAUUAUGCAAUGCUUGCAAAUUCACAAGCUUGCCUUGAUAUACCC- .(((((....(((....)))))))).--.((((((((.((((.......))))))))))))((((.((((.(((((........)))))))))..))))......- ( -26.40, z-score = -2.40, R) >droGri2.scaffold_15126 5858589 104 - 8399593 UUGCGUAUACGCCACGUGGCACGCAC--UUGAUUAAGUCAUUCGAUUUCAAUGUUUAAUCAAUUAUGCGACGUUUGCAAAUUUGCCAGUCCGUCUGCAUAUUCCCC .(((((....(((....)))))))).--(((((((((.((((.(....)))))))))))))).(((((((((..((((....)))..)..)))).)))))...... ( -28.00, z-score = -2.62, R) >consensus UUGCGUAUACGCCACGUUGCACGCACCGUUGAUUAAGUCGUUCGUUUUCCGUGUUUAAUCAAUUAUGCGACGUUUGCAAAUUCACGUAGCUGCU____________ ((((......((......)).(((....(((((((((.(((.........))))))))))))....)))......))))........................... (-15.06 = -14.66 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:21 2011