| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,637,572 – 15,637,677 |
| Length | 105 |
| Max. P | 0.563592 |
| Location | 15,637,572 – 15,637,677 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.22 |
| Shannon entropy | 0.71042 |
| G+C content | 0.52751 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -11.15 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15637572 105 + 23011544 GAUCCGGUGAUC-CCGCCGGGUCAUCAGGAAUGGAUUGCUGGACGUUGUUGGCCACUAAAAGCACUUGG-------UCCCCGCUCAGGGACAAAAGUAAUUAUACGUCCAGGG----- (((((((((...-.)))))))))...............((((((((.(((.((........))((((.(-------((((......)))))..)))))))...))))))))..----- ( -39.90, z-score = -2.08, R) >droSim1.chr2L 15390057 105 + 22036055 GAUCCGGUGAUC-CCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCACUAAAAGCACUUGG-------UCCCCGCUCAGGGACAAAAGUAAUUAUACGGCCAGGG----- (((((((((...-.)))))))))....(((...((((((((((........)))..............(-------((((......)))))...))))))).....)))....----- ( -40.10, z-score = -1.55, R) >droSec1.super_3 1892084 105 + 7220098 GAUCCAGUGAUC-CCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCACUAAAAGCACUUGG-------UCCCCGCUCAGGGACAAAAGUAAUUAUACGGCCAGGG----- ...((((..(((-(.(((.........)))..))))..))))......((((((..............(-------((((......)))))....(((....)))))))))..----- ( -38.20, z-score = -1.31, R) >droYak2.chr2L 2641417 104 - 22324452 GAUCCGGUGAUC-UCGCCGGGUCAUCGGGGAUGGAUUGCUGGCAGUUGUUGGUCACUAAAAGCACUUG--------UCCCCGUUCAGGGACAAAAGUAAUUAUACGUCCAGGG----- (((((((((...-.))))))))).....((((((((((((....(((.((((...)))).)))..(((--------((((......))))))).)))))))...)))))....----- ( -39.50, z-score = -2.54, R) >droEre2.scaffold_4929 7382568 104 + 26641161 GAUCCGGUGAUC-CCGCCGGGUCAUAGGGCAUGGAUUGCUGGCAGUUGUUGGUCACUAAAAGCACUUG--------UUCCCGUUCAGGGACAAAAGUAAUUAUACGACAAGGG----- (((((((((...-.))))))))).((((((...(((((....)))))....))).)))......((((--------(((((.....)))).....(((....))).)))))..----- ( -33.60, z-score = -1.28, R) >droAna3.scaffold_12984 448067 94 - 754457 GAUCCAGCAACC-ACGUAGGGCUAACGUAGACAGAUGGAUA---------GCGCAUUUAAGGCCCUG---------UUCCCAUCUCGGAACGACACCAAAUUUACGACAAAUG----- ..(((.((....-..)).)))....((((((.(((((((((---------(.((.......)).)))---------)..)))))).((.......))...)))))).......----- ( -18.70, z-score = -0.28, R) >dp4.chr4_group4 4439194 102 - 6586962 GAUCCGGUGAUC-CGGCCGGGUCAUUGGAGAUGGACAGCCG----CUGCGG--CACUAAAAGCAAUGGGCCU---GUCCCACUUCUGGGACGAAAGUAAUUAUACGGUUAGG------ ..((((((((((-(....))))))))))).......(((((----....((--(.(((.......))))))(---((((((....)))))))............)))))...------ ( -37.20, z-score = -1.40, R) >droPer1.super_10 2275368 102 - 3432795 GAUCCGGUGAUC-CGGCCGGGUCAUUGGAGAUGGACAGCCG----CUGCGG--CACUAAAAGCAAUGGGCCU---GUCCCACUUCUGGGACGAAAGUAAUUAUACGGUUAGG------ ..((((((((((-(....))))))))))).......(((((----....((--(.(((.......))))))(---((((((....)))))))............)))))...------ ( -37.20, z-score = -1.40, R) >droGri2.scaffold_15126 5856505 109 + 8399593 -GACCGGCGACUGUUGACUAGUGACCGGAAACAUUUUGACC--------UGUACCCUAAAAGCAAAUACACACAAAUUUCUGAACUGAGACGAAAGUAAUUACACGGCUUGGUUGAAG -..((((..((((.....))))..))))......((..(((--------..........((((..............(((......)))((....)).........)))))))..)). ( -19.80, z-score = -0.32, R) >droVir3.scaffold_12963 12368447 109 + 20206255 -GACCGGCGACUGGCGACUGGUGACCGGCAACAUUUCGACC--------UUUGCCCUAAAAGCGAAUGCGCACAAAUUUGAGCCCUGGGACGAAAGUAAUUACACGGCUUGGUUGCAG -.....(((((((((((..(((((..(....)...)).)))--------.)))))......(((....)))........(((((.((..((....)).....)).))))))))))).. ( -32.60, z-score = -0.96, R) >consensus GAUCCGGUGAUC_CCGCCGGGUCAUCGGGGAUGGAUUGCUG____UUGUUGGCCACUAAAAGCACUUGG_______UCCCCGUUCAGGGACAAAAGUAAUUAUACGGCCAGGG_____ ((((((((.......)))))))).....................................................((((......))))............................ (-11.15 = -11.38 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:20 2011