| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,608,069 – 15,608,120 |
| Length | 51 |
| Max. P | 0.554969 |
| Location | 15,608,069 – 15,608,120 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 99.22 |
| Shannon entropy | 0.01416 |
| G+C content | 0.52549 |
| Mean single sequence MFE | -15.44 |
| Consensus MFE | -13.84 |
| Energy contribution | -13.84 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15608069 51 - 23011544 AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGAGGCAGACGGGCG .(.((((((((((.(((((((....))).)))).)))))))))).)..... ( -17.20, z-score = -2.66, R) >droSim1.chr2L 15360109 51 - 22036055 AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGCGGCAGACGGGCG .(.((((((.(((((((((((....))).))))....)))).)))))).). ( -15.00, z-score = -1.37, R) >droSec1.super_3 1862708 51 - 7220098 AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGCGGCAGACGGGCG .(.((((((.(((((((((((....))).))))....)))).)))))).). ( -15.00, z-score = -1.37, R) >droYak2.chr2L 2601593 51 + 22324452 AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGCGGCAGACGGGCG .(.((((((.(((((((((((....))).))))....)))).)))))).). ( -15.00, z-score = -1.37, R) >droEre2.scaffold_4929 7349500 51 - 26641161 AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGCGGCAGACGGGCG .(.((((((.(((((((((((....))).))))....)))).)))))).). ( -15.00, z-score = -1.37, R) >consensus AGAUUGUUUUCCGCACAGCUAAAACUAGACUGUUUGGGCGGCAGACGGGCG .(.((((..((((.(((((((....))).)))).))))..)))).)..... (-13.84 = -13.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:17 2011